Thermobaculum terrenum: Tter_0374
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Entry
Tter_0374 CDS
T01134
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ttr
Thermobaculum terrenum
Brite
KEGG Orthology (KO) [BR:
ttr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ttr03016
]
Tter_0374
Enzymes [BR:
ttr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Tter_0374
Transfer RNA biogenesis [BR:
ttr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Tter_0374
Prokaryotic type
tRNA splicing ligases
Tter_0374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACZ41296
UniProt:
D1CEE0
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All DBs
Position
1:405908..407341
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AA seq
477 aa
AA seq
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MDLSKLEKIDEYTWTVPLKPGEKRAPVVLYGTKELLRSMDDKVLEQITNVAKLPGIVGKA
MTMPDAHWGYGFPIGGVAAFDPEEGGIISAGGVGFDISCGIRCLRTDLSLRDLEPYAERL
ADELYKTIPAGVGEEGEIKLSPKELDRVLEGGAEWAVREGYGVPEDLEYIEEHGRMEGAV
PEFVSKEAKKRQKGEMGTLGSGNHYLEVQVVEKVYDQKAAEAFGLWEGQIVVSIHCGSRG
LGHQIGTDYLLSLAKAAQRLKIDLPDRELACAPITSPEGHEYIGAMNAGINCALANRQIL
THLTRQAFRKIIPGTKVETLYDVSHNTCKREKHVIDGRERFVYIHRKGATRAYGPGHPDI
PQRYRNIGQPVLIGGSMGTGSYILVGVDTSEQRALSTASHGAGRALSRRQALKQWSGKEI
IQQLAARGIIVRAHSSRGVAEEAPDAYKNVDLVAEATEYAGLANRVALLRPKICVKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggacctgtcaaagctagagaagatagatgagtatacatggacagtgcctcttaagcct
ggggagaaaagagctcccgtagttctgtatggaaccaaggaactgctcaggtctatggac
gacaaggtacttgagcagataactaacgtggcaaagttacccggaatagtcggcaaggct
atgactatgcccgatgcacactggggttacggattccccattggcggagtagctgcattt
gacccggaagaaggaggcataatatctgctgggggcgttggcttcgacatctcttgtggt
atacgctgcctacgcacagacctatcgttgagagatctcgagccctatgccgagaggctg
gctgatgagctgtataaaactattcctgctggtgtaggagaagagggagagatcaaactt
tcccctaaagagctggacagagtgcttgaaggcggcgctgagtgggcagtcagggaaggt
tatggtgtgccagaggatttggagtatatagaagagcatggacggatggagggcgctgtc
cctgagttcgtctcaaaagaagcgaagaagcgccagaaaggtgagatgggtaccttgggg
tcaggtaatcactatcttgaagtgcaggtcgtagagaaggtttacgatcagaaagctgcg
gaagcgttcggcctatgggaggggcagatagttgtatccatccactgcggctccagaggg
ttaggacaccagataggaactgattacttgctgtcactggccaaggctgctcaaagactt
aagattgacttaccagatagagagctggcatgtgcccctataacctctccagaggggcat
gagtacataggggcgatgaatgcaggtataaactgtgcccttgcaaatcgacagatattg
actcatctcacccgccaggcattcaggaagataatacctggtactaaggtcgagactctg
tatgatgtttctcacaacacatgtaagcgcgagaaacatgtcatagatgggcgtgagaga
ttcgtctacatccaccggaagggcgcgacgcgcgcgtacggacctggacacccagatata
ccccaaagataccgaaatataggccaaccagtactgatcggcggcagtatggggacgggg
tcttatatattagtaggagtggatacgagcgagcaacgcgctctctccacggcatcccac
ggcgcaggaagggcgctaagtcgtaggcaggctctcaagcagtggtccggcaaggagatc
attcagcaactggcagcgagaggcataatagtacgcgcacactcatctcgaggtgttgca
gaggaagctcctgatgcttacaaaaacgtggatcttgtagcggaggctacggaatatgcc
ggcttggctaacagagttgccttattgcgccctaagatatgcgtgaagggttag
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