Thermus thermophilus SG0.5JP17-16: Ththe16_0913
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Entry
Ththe16_0913 CDS
T01867
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tts
Thermus thermophilus SG0.5JP17-16
Pathway
tts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ththe16_0913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tts03019
]
Ththe16_0913
03016 Transfer RNA biogenesis [BR:
tts03016
]
Ththe16_0913
Enzymes [BR:
tts01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Ththe16_0913
Messenger RNA biogenesis [BR:
tts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ththe16_0913
Transfer RNA biogenesis [BR:
tts03016
]
Prokaryotic type
tRNA degradation factors
Ththe16_0913
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_IclR
EutK_C
HTH_20
LexA_DNA_bind
HTH_27
Motif
Other DBs
NCBI-ProteinID:
AEG33330
UniProt:
F6DGH2
LinkDB
All DBs
Position
870886..873114
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AA seq
742 aa
AA seq
DB search
MQEALLEFFKKTGRPHRLEEILHRFGLEKREAKAHLKALVARGLLEKKGSRYFLANRVQG
PLSLHRDGYGFVRLPDGDLFIPPGYTQDAWPGDLVEARVMPSGRDGRPWGVVERVLKRAR
ERLVGTLDFRKGRALFLPDEPNLPELPLAPEGLAGLKRGSRIVVQVHYGKRPYGTFLAYL
GEGEAPETETEAVIAKYGLRAEFPEEVLKEAEAIPLEIPEAELRRREDFRGLRVFTIDGV
DAKDFDDAIHVERLPGGYRIGVHIADVSHYVKEGSLLDQEAFLRGTSVYLPGRVLPMLPE
RLSNGVCSLRPGEDRLVLSVLVDLTENLEVKRVRFREGVIRSVARLTYTEVEAFAEGFGF
PEAHAFLAEDLRLLLDLTQRMREKRLKEGALDFGFPEVKVEVGEEGELHLIPQAEPKARS
LIEELMLLANRLVAEYLVQKGLPGLFRVHEEPVQDAYEKLRQALARLGYTLPPKLSGHAL
QKALLASRGRPEEPVVAYLVLRSLRLARYAPENLGHFGLAMEHYLHFTSPIRRYPDLVVH
RVLKAALRRTLTPARKARWQEAFPAIAEHASEMERKAEAAERELTKYYMAKWAELHVGER
FLGKVTGVANFGAFVTLPNGVEGLVRLEALGPYTYSEEAMALLGPKGRRIRLGDEMEVKI
AGANPRLRQVDLLPVEEAPKKKNGKAKAKEVEMRKVVGPPEEKAKPSRPERLTVHTMYIG
EWRPKDAPPEEAPKGRRRKRRR
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagcgcttttagagtttttcaagaagacgggaaggccgcaccggctggaggag
atcctgcaccggttcggcctggagaagcgggaggccaaggcccaccttaaggccttggtg
gcgcgggggcttctggagaagaagggaagccggtacttcctggccaaccgggtccagggg
cccttaagcctccaccgggacgggtacggcttcgtccgtctccccgatggggacctcttc
atccccccggggtacacccaggacgcctggccgggcgacctggtggaggcccgcgtcatg
ccctcgggccgggacggaaggccttggggggtggtggagcgggtcctcaagcgggcgcgg
gagcggcttgtggggaccctggacttccggaaaggccgcgcccttttcctccccgacgag
cccaacctcccggagcttccccttgccccggaggggcttgcgggcctgaagcggggaagc
cgcatcgtggtccaggtccactacggcaagcgcccctacgggaccttccttgcgtacctg
ggggaaggggaggcccccgagacggagacggaggccgtcatcgccaagtacggcctccgc
gccgagtttcccgaggaggtcctgaaggaggcggaggccatccccttggagatccccgag
gcggagctcaggcggcgggaggacttcaggggccttcgggtcttcaccatagacggggtg
gacgccaaggactttgacgacgccatccacgtggagcgtctgcctgggggctaccgcatc
ggggtccacatcgccgacgtctcccactacgtcaaggagggaagcctcttggaccaggag
gccttcctccggggcaccagcgtctacctcccggggcgggtcctccccatgcttcccgaa
aggctttccaacggggtctgctccttgaggccgggggaggaccgcctggtcctctccgtg
ctcgtggacctcacggagaacctcgaggtcaagcgggtccgcttccgggaaggggtcatc
cggagcgtcgcccgcctcacctacacggaggtggaggccttcgccgagggctttggcttc
cctgaggcgcacgccttcctggcggaggacttgcgcctcctcttggacctcacgcagagg
atgcgggagaagcgcctaaaggagggcgccttggacttcggcttccccgaggtgaaggta
gaggtgggggaggaaggggagctccacctcatcccccaggcggagcccaaggccagaagc
ctcattgaggagctgatgctcctcgccaaccgactggtggcggagtacctggtgcaaaag
ggcctccccggtcttttccgcgtccacgaggagccggtccaggacgcctacgagaagctc
cgccaggccctggcccgcctgggctacaccctccctcccaagctttccggccacgccctg
caaaaggccctcctcgcctcgcggggccgtccggaggagcccgtggtggcctacctcgtc
ctccgctccttgcgcctggcccgctacgccccggagaacctgggccacttcggcctcgcc
atggagcactacctgcacttcacgagccccatccgccgctacccggacctggtggtccac
cgggtgctcaaggctgccctgcgccggaccctcaccccggcgcggaaggcacggtggcag
gaggcctttcccgccatcgccgagcacgcttcagagatggaaaggaaggcggaggccgcc
gagagggagctcaccaagtactacatggccaagtgggccgagctccacgtgggggagcgc
tttttggggaaggtcaccggggtggcgaacttcggggccttcgtgaccctgccaaatggg
gtggagggcctggtgcgcctcgaggccctggggccctacacctacagcgaggaggccatg
gccctcctcggccccaaagggcggaggatccgcctcggggacgagatggaggtaaaaatc
gccggggccaacccgaggcttaggcaggtggacctcctccccgtggaggaggcccctaag
aaaaagaacgggaaggcaaaggctaaggaggtagagatgcgcaaggtggtgggacccccc
gaggagaaggcgaagccgagccgccccgagcggctcacggtgcacaccatgtacatcggg
gagtggcgccccaaggacgcgcccccggaggaggccccgaagggcaggcggcggaagcgg
cgccgctag
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