Thermus thermophilus SG0.5JP17-16: Ththe16_1829
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Entry
Ththe16_1829 CDS
T01867
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tts
Thermus thermophilus SG0.5JP17-16
Pathway
tts03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tts00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ththe16_1829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tts03021
]
Ththe16_1829
03400 DNA repair and recombination proteins [BR:
tts03400
]
Ththe16_1829
Enzymes [BR:
tts01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ththe16_1829
Transcription machinery [BR:
tts03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ththe16_1829
DNA repair and recombination proteins [BR:
tts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ththe16_1829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AEG34223
UniProt:
F6DFG5
LinkDB
All DBs
Position
complement(1723656..1728230)
Genome browser
AA seq
1524 aa
AA seq
DB search
MKKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECAC
GKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSA
TELEQVLYFSKYIVLDPKGAVLNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVK
DGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGE
VLAELPEPYLFRAEEEGVVELRELEEGAFLVLRQEDEPVATYFLPVGMTPLVVHGEIVEK
GQPLAEAKGLLRMPRQIRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGAR
VEPGDRIVAAIDPEEEVIAEAEGIVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDV
LADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEE
MKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDL
NDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPL
RSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKR
MEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVL
VEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAK
PSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLK
YVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELI
QLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEK
KQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAIFKNFEENYPFNPL
YVMTQSGARGNPQQIRQLCGMRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKG
GADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADI
EAGLYGRVLAREVEVLGVRLEEGRYLSMEDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGV
CQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVI
ELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVE
AGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVE
VTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASF
QNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARK
EAVEAKERPAARRGVKREQPGKQA
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaggttcgtaaggttcgcatcgctttggcctccccggagaagatccgctcc
tggagctacggggaggtggagaagcccgagaccatcaactaccgcaccctcaagcccgag
cgggacggcctctttgacgagcgcatcttcggccccatcaaggactacgagtgcgcctgc
ggcaagtacaagcgccagcgctttgagggcaaggtgtgcgagcggtgcggcgtggaggtg
acgaagagcatcgtccgccgctaccgcatgggccacattgagctcgccacccccgccgcc
cacatctggttcgtcaaggacgtcccctccaagatcgggaccctcttggacctctccgcc
accgagctggagcaggtcctctacttcagcaagtacatcgtcctggaccccaagggggct
gtcctgaacggggtcccggtggaaaagcgccagctcctcaccgacgaggagtaccgggag
ctccgctacggcaagcaggagacctatcccctgccccctggggtggacgccctggtgaag
gacggggaggaggtggtgaagggccaggagcttgcccctggggtggtgagccgcctggac
ggcgtggccctctaccgcttcccccgccgcgtccgggtggagtacgtgaagaaggagcgg
gccgggctcaggcttcccctcgccgcctgggtggagaaggaggcctacaagcccggcgag
gtcctcgccgagctccccgagccctacctcttccgggccgaggaggagggcgtggtggag
cttagggagctggaggaaggggccttcctcgtcctccgccaggaggacgagcccgtggcc
acctacttcctccccgtgggcatgacgcccctcgtggtccacggggaaatcgtggagaag
ggccagcccctggccgaggccaagggccttctccgcatgccccgccagatccgggccgcc
caggtggaggcggaggaggagggggagacggtctacctcaccctcttcctggagtggacg
gagcccaaggactaccgcgttcagccccacatgaacgtggtggtccccgagggggccagg
gtggagcccggggacaggatcgtggccgccattgaccccgaggaggaggtcatcgccgag
gccgaagggatcgtccacctccacgagcccgccagcatcctggtggtcaaggcccgggtc
tacccctttgaggacgacgtggaggtttccaccggggaccgggtggccccgggggacgtc
ctcgccgacgggggcaaggtcaaaagcgacgtctacggccgggtggaggtggacctggtc
cgcaacgtggtccgggtggtggagtcctacgacatcgacgcccgcatgggggccgaggcc
atccagcagctcctcaaggagctggacctcgaggccctggagaaggagctcctggaggag
atgaagcacccctcccgggcccggcgggccaaggccaggaagcgcctggaggtggtgcgg
gccttcctggactcggggaaccggcccgagtggatgatcctcgaggccgtccccgtcctt
cccccggacctgcggcccatggtccaggtggacggcggccgcttcgccacgagcgacctc
aacgacctctaccggcgtctcatcaaccgcaacaaccggctgaagaagcttttggcccag
ggggcccccgagatcatcatccgcaacgagaagcggatgctgcaggaggcggtggacgcc
ctcctggacaacggtcgccgcggcgctcccgtgaccaaccccggctccgaccggcccctc
aggagcctcaccgacatcctctccggcaagcagggccgcttccgccagaacctcctgggc
aagcgggtggactactcgggccgaagcgtgatcgtggtggggccccagctcaagctccac
cagtgcggcctgcccaagcgcatggccctggaactcttcaagcctttcctcctcaagagg
atggaggagaagggcatcgcccccaacgtcaaggcggcgcggcgcatgctggagcgccag
cgggacatcaaggacgaggtgtgggacgccctggaggaggtcatccacggcaaggtggtc
ctccttaaccgcgcccccaccctgcaccgcctgggcatccaggccttccagcccgtcttg
gtggaggggcagtccatccagctccaccccctggtgtgcgaggccttcaacgccgacttt
gacggggaccagatggcggtccacgtgcccctctcctccttcgcccaggccgaggcccgc
atccagatgctctccgcccacaacctcctctccccggcttcgggggagcctttggccaag
cccagccgggacatcatcctgggcctctactacatcacccaggtgcgcaaggagaagaag
ggggcgggcctggagttcgccacccccgaggaggccctggccgcccacgagcggggagag
gtggccctgaacgcccccatcaaggtggcgggcagggagaccagcgtgggccggctcaag
tacgtcttcgccaaccccgacgaggcccttctcgccgtggcccacggcatcgtggatctg
caggacgtggtcaccgtccgctacatgggcaagcggctggagacgagcccgggccgcatc
ctcttcgcccgcatcgtggccgaggcggtggaggacgagaaggtggcctgggaactcatc
cagctggacgtgccccaggagaagaactccctcaaggacctggtctaccaggccttcctc
cgcctggggatggagaagaccgccaggcttctggacgcccttaagtactacggcttcacc
ttctccaccacgagcggcatcaccatcggcattgacgacgccgtgatcccggaggagaag
aagcagtacctggaggaggccgaccgcaagctcctccagattgagcaggcctacgagatg
ggcttcctcaccgaccgggagcggtacgaccagatcctccagctctggaccgagaccacg
gagaaggtcacccaggcgatcttcaagaactttgaggagaactaccccttcaaccccctc
tacgtgatgacccagtccggggcccggggtaacccccagcagatccgccagctctgcggc
atgcgcggcctcatgcagaagccctcgggcgagacctttgaggtgccggtgcgctcctcc
ttccgcgagggcctcaccgtcttggagtacttcatctccagccacggggcccggaagggt
ggggcggacaccgccctccgcaccgccgactccggctaccttacccgcaagctcgtggac
gtgacccacgagatcgtggtgcgggaggcggactgcggcaccaccaactacatctccgtc
cccctcttccagcccgacgaggtgacccgctccttgcgcctgaggaagcgcgcggacatt
gaggcgggcctctacgggcgcgtcctggcccgggaggtggaggtcctgggggtgcgcctc
gaggagggccgctacctctccatggaggacgtccaccttctcatcaaggccgccgaggcc
ggggagatccaggaggtgcccgtccgcagccccctcacctgccagacccgctacggggtc
tgccagaagtgctacgggtacgacctctccatggcccggcccgtctccatcggcgaggcg
gtgggcatcgtggccgcccagtccatcggcgagcccggcacccagctcaccatgcgcacc
ttccacacgggcggcgtggccggggccgcggacatcacccagggtctgccccgcgtcatt
gagctctttgaggcccgccgccccaaggccaaggcggtgatctccgagattgacggcgtg
gtgcgcattgaggaaacggaggagaaactctccgttttcgtggagtccgagggcttctcc
aaggagtacaagctccccaaggaggcgcgccttctcgtcaaggacggggactacgtggag
gcgggccagcccctcacccgcggggccattgacccccaccagcttctggaggccaagggc
cccgaggcggtggagcgctacctggtggaggagatccagaaggtctaccgggcccagggc
gtgaagctgcacgacaagcacatcgagatcgtggtccggcagatgatgaagtacgtggag
gtcaccgaccccggggatagccgcctcttggagggccaggtcctggagaagtgggacgtg
gaggccctgaacgagaggctcatcgccgagggcaagaccccggtggcctggaagcccctc
ctcatgggggtcacgaagagcgccctctccaccaagagctggctctccgccgccagcttc
cagaacaccacccacgtcctcaccgaggcggccatcgccgggaagaaggacgagctcatc
ggcctcaaggagaacgtcatcctgggccgcctgatccccgcgggcacaggctcggacttc
gtccgcttcacccaggtggtggaccagaagaccctgaaggccattgaggaggcccgcaag
gaggcggtggaggccaaggagcggcccgccgcccggcgcggggtcaagcgggagcagccc
ggcaagcaggcttaa
DBGET
integrated database retrieval system
