Thermothielavioides terrestris: THITE_2057738
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Entry
THITE_2057738 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
THITE_2057738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttt03021
]
THITE_2057738
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2057738
Transcription machinery [BR:
ttt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
THITE_2057738
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
THITE_2057738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
11519727
NCBI-ProteinID:
XP_003656480
JGI:
Thite2_2057738
UniProt:
G2REL1
LinkDB
All DBs
Position
5:complement(1325916..1326761)
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AA seq
281 aa
AA seq
DB search
MATDTLSSSNLDEHRPSYLASQLLAHAAPAYSFSFTPFLQRTYQHSLPPDRPICKAYLAG
NCPLKSRCPDRHATSAATAPGGGGGGGGFGSLVCKHWLRGLCKKGETCEFLHEYNLRKMP
ECNFFVRNGYCSNGDECLYLHIDPSSRLPPCPHYERGFCPLGPRCDKKHVRRRMCPFYLA
GFCPDGRACREGAHPRWVPEGQLEKPKAKEERKEEVGGAGGAMEDRERELQREREREMDR
GGRDRERDGERGHDGRHKDRFGGGRGGRWRGKGGRFRARGH
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgacacattatcctcctcaaacctcgatgaacaccgaccctcatacctcgcg
tcgcaactcctggcgcacgcggcacccgcctactccttcagcttcacaccgttcctgcaa
cgcacctatcagcactccctccccccggaccgacccatctgcaaagcctacctcgcaggc
aactgcccgctcaaatcgcggtgccccgaccgccacgccacctcggccgcgacggccccc
ggaggcggcggcggtggtggtggtttcggctcgctggtctgcaagcactggcttcggggc
ctctgcaagaagggcgagacgtgcgagttcctgcacgagtacaacctgcgcaagatgccc
gagtgcaacttcttcgtgcgcaacggctactgcagcaacggcgacgagtgcctgtacctg
cacatcgacccgtcgtcgcggctgccgccgtgcccgcactacgagcgggggttctgcccg
ctgggcccgcgctgcgacaagaagcacgtgcgccggcgcatgtgccccttctatctcgcc
ggcttctgtcccgacgggcgggcgtgcagggagggcgcgcatccgcggtgggtgccggag
ggccagttggagaagcctaaagcgaaggaagagaggaaggaggaggtgggcggtgctggt
ggggcgatggaggacagggagcgggagcttcagagggagcgggagcgggagatggataga
ggggggagagacagggagagagatggcgagagaggccacgatgggcgacataaagatcgg
ttcggaggcggtaggggcgggcggtggcgagggaagggcggccggttcagggccagaggg
cattaa
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