Thermothielavioides terrestris: THITE_2074474
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Entry
THITE_2074474 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITE_2074474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2074474
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
THITE_2074474
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
THITE_2074474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
ECR1_N_2
S1
Motif
Other DBs
NCBI-GeneID:
11521229
NCBI-ProteinID:
XP_003649781
JGI:
Thite2_2074474
UniProt:
G2QS55
LinkDB
All DBs
Position
1:join(5007492..5008013,5008099..5008269)
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AA seq
230 aa
AA seq
DB search
MDTPKPAAAPTLVIPGQLLGPASRFLPGPGTHLHESNLYSSLLGQVHITQPARRPAPAQP
GPAKRLTKITPAPAPAPAELPTISVAPARAAGAGAGAGAGKRREVLPEVGNIVLCRVIRI
TPRQAVVAILVCGDSVLEADWQGLIRVQDIRATEKDRVKVYESFRPGDIVRAEVISLGDQ
ANYYLSTARNELGVILATSEAGNTMYPVSWKEFRDPETGMTELRKVAKPY
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atggacacgcccaaaccggccgccgcccccaccctggtgatccccggccagctgctcggc
cccgcctcgcgcttcctccccggcccgggcacgcatctgcacgagtccaacctctactcc
tcgctgctagggcaggtgcacatcacccagccggcgcggcggcccgcgcccgcgcagccc
ggccccgccaagcgcctgaccaagatcacgcccgcgccggcgccggcgccggccgagctg
ccgaccatctccgtcgcgccggcgcgcgcggccggcgctggcgctggcgctggtgctggg
aagaggagggaggtgctgcccgaggtggggaatatcgtgctgtgccgcgtgatacggatc
acgccgcggcaggcggtggtggcgatcctggtgtgcggggactcggtgctggaggcggac
tggcagggcttgattcgcgtgcaggacatcagggcgaccgagaaggatcgggtcaaggtg
tacgagagctttcggcccggggatatcgtccgggcggaggtgatctcgctcggtgaccag
gcgaactactacctgtcgacggcgcggaacgagctgggcgtcatactggcgacgagcgag
gcggggaatacgatgtatcccgtcagttggaaggagttcagggatccggagacggggatg
acggagctgaggaaggttgcgaaaccctattga
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