Thermothielavioides terrestris: THITE_2087360
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Entry
THITE_2087360 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03018
RNA degradation
ttt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THITE_2087360
09123 Folding, sorting and degradation
03018 RNA degradation
THITE_2087360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2087360
03041 Spliceosome [BR:
ttt03041
]
THITE_2087360
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
THITE_2087360
mRNA degradation factors
5'-3' decay
Lsm complex
THITE_2087360
Spliceosome [BR:
ttt03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
THITE_2087360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Gemin6
Motif
Other DBs
NCBI-GeneID:
11517427
NCBI-ProteinID:
XP_003652225
JGI:
Thite2_2087360
UniProt:
G2R2X3
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All DBs
Position
2:complement(join(3953384..3953575,3953696..3953772,3953851..3953875))
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AA seq
97 aa
AA seq
DB search
MSLNSYVDKKVCIITTDGRNLVGTLAAHDHTTNLVLKNTVERVIRTPDEGEPSVEVPLGL
YIIRGENVCLVGLVDEALDASINWAEVKGAVIGTTKH
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaacagctatgtcgacaagaaggtgtgcatcatcaccaccgacgggcgcaat
ctcgtcggcaccctggcagcccacgaccacaccacgaacctggtcctcaaaaacacggtc
gagcgcgtgatccgcacccccgacgagggcgagccgtcggtcgaggtgccgctgggcctg
tacatcatccgcggcgagaacgtgtgcctggtggggctggtcgacgaggcgctggacgcg
agcatcaactgggctgaggtgaagggcgccgtcatcgggacgacgaagcactga
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