Thermothielavioides terrestris: THITE_2107772
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Entry
THITE_2107772 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03013
Nucleocytoplasmic transport
ttt03015
mRNA surveillance pathway
ttt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THITE_2107772
09122 Translation
03013 Nucleocytoplasmic transport
THITE_2107772
03015 mRNA surveillance pathway
THITE_2107772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2107772
03041 Spliceosome [BR:
ttt03041
]
THITE_2107772
03009 Ribosome biogenesis [BR:
ttt03009
]
THITE_2107772
03012 Translation factors [BR:
ttt03012
]
THITE_2107772
Enzymes [BR:
ttt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THITE_2107772
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
THITE_2107772
mRNA cycle factors
Stress granule specific factors
THITE_2107772
Spliceosome [BR:
ttt03041
]
Complex C
Other components
EJC/TREX
THITE_2107772
Ribosome biogenesis [BR:
ttt03009
]
Eukaryotic type
90S particles
Helicases
THITE_2107772
Translation factors [BR:
ttt03012
]
Eukaryotic type
Initiation factors
eIF-4
THITE_2107772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
TniB
Flavi_DEAD
COG4_N
Helicase_RecD
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
11521213
NCBI-ProteinID:
XP_003649289
JGI:
Thite2_2107772
UniProt:
G2QV66
LinkDB
All DBs
Position
1:complement(join(2838801..2838859,2838921..2839961,2840033..2840138))
Genome browser
AA seq
401 aa
AA seq
DB search
MADGVGIDRKADEKIQFSTSKEVTVHPTFESMSLKESLLRGIYAYGYESPSAVQSRAIVQ
ICKGRDTIAQAQSGTGKTATFAISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGD
YMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADE
LLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGI
KQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDM
PQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRF
GRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLIS
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggagtcggtattgaccgcaaggccgatgagaagatccagttctcgacctcg
aaagaggtcacggtacatccgaccttcgagtcgatgtccctaaaggagagccttcttcgc
ggtatctacgcttatggatacgaatcgccgtcggccgtccagtcgcgggcgattgtccag
atctgcaagggccgcgacaccatcgcgcaggcgcaatccggcacgggtaaaaccgcgacg
ttcgccattagcatgcttcaggtcatcgataccgccgtgcgcgagacccaggctctggtc
ctctcgccgactcgcgaactcgcgacgcagatccagagcgtggtgatggccttgggcgac
tacatgaacgtgcagtgccatgcctgcatcggcggcacgaacgtgggcgaagatattcgc
aagctcgactacggccagcacattgtctctggtactcccggccgtgtagccgacatgatc
cgccgccgccacttgcggacacgccacatcaagatgctcgtgctcgacgaagccgacgag
ctgctgaaccaaggcttccgggaacagatctacgacgtgtaccgctatctgccgcctgcc
acccaggtcgttgtggtctcagccacgcttccctacgacgttctcgacatgaccacaaaa
ttcatgaccgaccccgtccgcatcctcgtcaagcgtgacgagctgacgctcgagggcatc
aagcagtacttcatcgcggtggagaaggaggactggaagttcgatacgctgtgcgacctc
tacgacactctgaccatcacccaggcggtcatcttctgcaacacgcgacgcaaggtcgac
tggctcaccgacaaaatgagagaagcgaacttcacggtcagcagcatgcacggcgacatg
cctcagaaggagcgcgacagcatcatgcaggatttcaggcagggcaacagcagggtgctg
atatctaccgatgtctgggcccgtggcatcgatgtccaacaagtcagcttggtcatcaac
tacgacctgccgagtaaccgtgagaactacatccaccgcatcggccgctcgggcagattc
ggccgcaagggtgtcgctatcaacttcgttacaagcgaggatgtccgcattctccgcgat
attgagctgtactactcgacgcagatcgacgagatgcccatgaacgttgccgaccttatc
tcataa
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