Thermothielavioides terrestris: THITE_2111758
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Entry
THITE_2111758 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03013
Nucleocytoplasmic transport
ttt03015
mRNA surveillance pathway
ttt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THITE_2111758
09122 Translation
03013 Nucleocytoplasmic transport
THITE_2111758
03015 mRNA surveillance pathway
THITE_2111758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2111758
03041 Spliceosome [BR:
ttt03041
]
THITE_2111758
Enzymes [BR:
ttt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THITE_2111758
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
THITE_2111758
Spliceosome [BR:
ttt03041
]
Complex C
Other components
EJC/TREX
THITE_2111758
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
THITE_2111758
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
CMS1
Motif
Other DBs
NCBI-GeneID:
11518939
NCBI-ProteinID:
XP_003651446
JGI:
Thite2_2111758
UniProt:
G2R3L0
LinkDB
All DBs
Position
2:complement(join(1096731..1096779,1096840..1097097,1097166..1097526,1097578..1097988,1098673..1098898))
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AA seq
434 aa
AA seq
DB search
MSAEEDLIDYSDDELNNDTAAAAANGKKGDAGAAGQNVDKKGSYVGIHSTGFRDFLLKPE
LLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECS
VLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEILKNKETHPHIIVGTP
GRLNALVRDKNLRLGSVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSD
EIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNELLDELQFNQVIIF
VKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDI
ERINLAINYDMPADADSYLHRVGRAGRFGTKGLAISFVTTDQDKDVLQQIEKRFEVALPE
FPKEGVDASTYMAA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgaagaggatctcatcgactactctgatgacgagctgaacaacgacaccgcc
gctgcggctgccaacggaaagaagggcgacgctggcgccgccgggcagaatgttgacaag
aagggctcctacgtgggcatccattcgactggtttccgcgactttctcttgaagcccgag
ctccttcgcgccatcgccgattgcggtttcgagcatccgtcggaggtgcagcagacgtgc
attccccaggctatgctcggcggcgacatcatttgccaggcgaagtcgggtctcggcaag
acggctgttttcgttctcaccactctccagcaagttgaacccgttgccggagagtgctcc
gttctggttatgtgccacactcgtgagctggctttccagatccgcaacgaatacaaccgc
ttcagcaagtacatgcccgacatcaagaccggcgtgttctacggtggcactcccatccag
aaggatgccgagatcctcaagaacaaggagacgcacccccacatcatcgtcggcacccct
ggccggctcaatgctcttgtccgcgataagaacctgcggctcggaagtgtccgcatgttc
gttttggacgagtgcgacaagatgcttgaccagattgacatgcgtcgcgatgtccaagag
atcttccgcgccaccccgcagcagaagcaggtcatgatgttctctgctacactgtcggac
gagatcaagcccatctgccggaagttcatgcagaacccgacggagcattatgttgacgaa
gacaccaagttgacgcttcacggcctccagcagtactacattcctctggaggagagagag
aagaaccggaagctgaacgagctgcttgatgagctccagttcaaccaggtcatcatcttc
gtcaagagtacgctccgtgccaccgagcttgacaagctcctgcgcgagtgcaacttcccc
tcgattgctgttcactcgggtgtcagccaggaggaacgcatccgtcggtacaaggagttc
aaggagttcaacaagcgtatctgcgtggccaccgacgtcttcggcagaggtatcgacatc
gagcggatcaatcttgccatcaactatgatatgccggccgacgccgattcgtatcttcac
cgtgtcggacgtgcgggccgtttcggcaccaagggtcttgcgatctccttcgtcaccacc
gaccaggacaaggacgttctccagcagatcgagaagcgcttcgaggtcgctcttcccgag
tttcccaaggagggcgtcgatgcctcgacttacatggctgcttaa
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