Thermothielavioides terrestris: THITE_2113438
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Entry
THITE_2113438 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITE_2113438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2113438
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
THITE_2113438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
Rrp44_S1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
OB_RNB
DUF7169
Motif
Other DBs
NCBI-GeneID:
11517412
NCBI-ProteinID:
XP_003652210
JGI:
Thite2_2113438
UniProt:
G2R2V8
LinkDB
All DBs
Position
2:complement(join(3901869..3904630,3904697..3904892))
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AA seq
985 aa
AA seq
DB search
MASLKRSLDSDPFAANISSKVYVRSTKSGKVQKIVREVYLRQDIPCSSRLCQACLKTAPR
DAAGRPTPFVLSEAPAGTSVFPQGHYLVPDTNAFLTAMDLFEQSSAFYDVVVLQVVLEEL
RNRSLPLYNRLIGLTKSEDKRFYVFFNEFRLETHVARREGESVNDRNDRAVRKAVAWYGQ
HLARTAAKKVPAVVMLSNDRANLQKAKQEGIPACSLAEYVKQLKDGEKLLDMLPETEDLE
IKDKRPGEPLYPEYFSMSKMMTGVKNGLLHQGIFNVSPYNYLEGSIRVPAFPKPLLILGR
ENINRAVDGDLVVVEVLPKEQWKEPSTRVIEEDAITKNENPDAEETADFVSEKERKALQE
EVKRTHNKTTEGHAQPTAKVVGVVKRNWRQYVGHIDQSSVSQSAQQGRKQDTVFLIPMDK
KIPKIRLRTRQVAELVGKRILVTIDAWDRSSRHPTGHFVRSLGEMETKAAETEALLLEYD
VQYRPFPKTVLDCLPKEGHDWRVPQSTDDPGWRGREDLRHLLICSIDPIGCQDIDDALHS
RPLPNGNIEVGVHIADVSHFVKPNTAMDAEASIRGTTVYLVDKRIDMLPMLLGTDLCSLK
PYVERYAFSVLWELSPDADIVNVRFTKSVIKSREAFSYEQAQLRVDDPSQQDDLTKSIRT
LLALSRKLKQKRMDAGALSLSSPEVKVQMESETSDPIDVKTKELLDTMSLVEEFMLLANV
SVARKIYEAFPQTAILRRHGAPPKTNFDELANQLRVKRGLDLNVESSRALADSLDACVDP
KEPFFNTLVRIMATRCMMAAEYFCSGTQAYPEFRHYGLASEIYTHFTSPIRRYADLVAHR
QLAAAIGYEAVDPSVRSRGRLEAVCRNLNVRHHNAQLAGRASIAYYVGQALRGKAAEEDG
FVLKIFSNGFVVLVPRFGIEGLIRLRDLADPEPAAAYDAETYTLTTSGSRAVTVELFQKV
RVRVTDHKDEAMGKRGVKMELLSVY
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcctcaagagatcgctcgactcggacccgttcgcggcgaacatctccagcaag
gtctacgtgagatcaacaaagagcggcaaagtccagaaaatagtccgcgaagtctatctc
cgccaagacattccgtgctcgtcccggctgtgccaggcctgcctcaagaccgcgccccgg
gatgccgcagggagacccaccccgtttgtcctctccgaggcgcccgccggcaccagcgtc
ttcccccagggccactacctggtgccggacacgaatgccttcctgaccgccatggacctc
tttgagcagagctcggccttctacgacgttgtcgttttgcaggtcgtgctggaagagctg
cgcaaccgctccctaccgctctacaaccgcctcatcggcctgaccaagagcgaggacaag
cgcttctatgtcttcttcaacgaattccgcctcgagacccacgtcgcccgccgggagggc
gagtcggtcaacgaccgcaatgaccgcgccgtccggaaggccgtcgcctggtacggccag
cacttggcgcggactgccgcgaagaaggtgcccgctgtggttatgcttagcaacgaccgg
gccaacctgcaaaaggcgaagcaggaaggcatccccgcgtgctccctggctgagtatgtc
aagcaactcaaggacggtgagaagctcctcgacatgctcccggagaccgaggacctggag
atcaaggacaagcggcccggcgagcccctctatccggagtactttagcatgtcgaaaatg
atgacgggtgtaaagaacggcttgctgcaccagggcatcttcaatgtttccccctacaac
tatctggaaggctcaataagggtaccggcgttccccaagcccctgctgatcctgggaagg
gaaaacatcaatcgtgccgtcgacggcgacctcgtcgtcgtcgaggtgctgcctaaagag
cagtggaaggagccctcgacccgggtgatcgaggaagacgccatcacgaagaacgagaac
cctgacgccgaggagacggcagacttcgtctcggagaaggaacgcaaagcgctgcaggag
gaggtgaagcggacccacaacaagacgaccgaaggccatgctcagcccactgcgaaagtc
gtgggtgtagtgaagcggaactggcgccagtacgtcggccatatcgatcagtcgtcggtc
agccagtcagcgcagcaagggcgcaagcaggataccgtcttcctcattcccatggacaag
aagatccccaagatccggctacgcacgcgccaagtggccgagctggtcggcaagcggatc
ctcgtcaccatcgatgcgtgggaccggagctcgcgccaccccaccggccattttgtcagg
tcgctgggcgagatggaaacgaaggccgccgagacggaagctctgctgttagagtatgac
gtccagtaccgcccgttccccaagaccgtcctcgactgcctgcccaaggaaggccacgac
tggagggtgccccagagcacggacgatccggggtggagaggccgggaagatcttcggcat
ctcctcatctgcagtatcgaccccatcggctgccaagatatcgacgatgctctccattcg
cggccgcttccgaacggcaacatcgaggtcggcgtccacattgccgacgtgtcccatttc
gtcaagcccaacaccgccatggacgccgaagctagtattcgcggcacgacagtctacctc
gtcgacaagcgtatcgacatgcttcccatgcttttgggcactgatctgtgctctctcaag
ccttacgtggagcggtatgccttctcggtgctctgggagctgtcgcccgacgccgacatt
gtgaatgtgcggttcacaaagtcggtcatcaagtctcgcgaggcgtttagttacgagcag
gcacagctcagggtcgacgacccctcgcagcaggacgacctcaccaagagcatccggacc
ctgctcgcgctgtccaggaagctaaagcagaagcgcatggacgcgggcgccttgagtctc
tcctcgcctgaggtcaaggtgcagatggagtccgagacgtcggaccccatcgacgtcaag
accaaggaactgctcgacaccatgtcgctcgtcgaggaattcatgctgctcgctaacgtc
agcgtggcccgcaagatctacgaggcgttcccgcagacggccatcctccgccggcacggc
gcgcctcccaagaccaacttcgacgagctcgccaaccagctgcgggtgaagcggggtctc
gacctgaacgtcgagtcctcgcgcgcgctcgccgacagcctcgacgcgtgcgtcgacccc
aaggagcccttcttcaacacgctcgtgcgcatcatggccacgcgctgcatgatggcggcc
gagtacttctgctcgggcacgcaggcgtacccggagttccggcactacggcctcgccagc
gagatctacacgcacttcacgtcgccgatccggcggtacgccgacctggtggcgcaccgg
cagctggccgccgccatcgggtacgaggccgtcgacccgagcgtgcgcagccgcggccgg
ctcgaggccgtgtgccggaacctcaacgtgcggcaccacaacgcgcagctcgccggccgc
gcgagcatcgcctactacgtgggccaggcgctccgcggcaaggccgccgaggaggacggc
ttcgtgctcaagatcttcagcaacggcttcgtcgtgctcgtgccccgcttcggcatcgag
ggcctcatccgcctgcgcgacctggccgacccggagccggccgccgcgtacgacgccgag
acgtacacgctcacgaccagcggcagccgcgccgtcacggtcgagctgttccagaaggtg
cgcgtgcgcgtgacggaccacaaggacgaggccatgggcaagcgcggcgtcaagatggag
ctgctgagcgtctactga
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