KEGG   Thermothielavioides terrestris: THITE_2115403
Entry
THITE_2115403     CDS       T02228                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ttt  Thermothielavioides terrestris
Pathway
ttt03018  RNA degradation
ttt03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ttt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THITE_2115403
  09123 Folding, sorting and degradation
   03018 RNA degradation
    THITE_2115403
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ttt03019]
    THITE_2115403
   03041 Spliceosome [BR:ttt03041]
    THITE_2115403
Messenger RNA biogenesis [BR:ttt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     THITE_2115403
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     THITE_2115403
Spliceosome [BR:ttt03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    THITE_2115403
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 11514905
NCBI-ProteinID: XP_003653219
JGI: Thite2_2115403
UniProt: G2R4D9
LinkDB
Position
2:join(7309870..7309872,7309948..7310088,7310156..7310206,7310291..7310479)
AA seq 127 aa
MLPLGLLNAAQGHPMLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDRFMRLPEVY
VKGNNIKYLRVPDEIIDIVKEQQSQQSGYRGGRGGQGRGDHAGRGGDRGRGGRGRGGGRG
GRGGRGS
NT seq 384 nt   +upstreamnt  +downstreamnt
atgctgcccctcggactcctgaacgcggcgcaaggccaccccatgctggtcgagctcaag
aacggcgagacgctcaacggccacctcgtgctgtgcgatacgtggatgaacttgacgctg
cgcgaagtggtgcagacgagtccggagggcgacagatttatgcggctgccggaagtttat
gttaaggggaataatatcaagtacctgcgggtgccggacgagatcatcgacattgtcaag
gagcagcagagtcaacaaagcggctaccgtggtggacgtggcgggcaagggagaggagac
cacgcggggagaggcggggatagggggcgtggcggaagaggacgtggaggcgggcggggt
ggaagaggaggccgggggtcatga

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