Thermothielavioides terrestris: THITE_2116183
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Entry
THITE_2116183 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
THITE_2116183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2116183
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
THITE_2116183
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
11520790
NCBI-ProteinID:
XP_003653620
JGI:
Thite2_2116183
UniProt:
G2R0B6
LinkDB
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Position
2:complement(join(9138378..9139131,9139187..9139467))
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AA seq
344 aa
AA seq
DB search
MDIDDEDDFYAPEEPQAPAAQPTPPAPSAPAKKDANDELEEGEEEDEGGAMDEDDDSVRT
VVLLAYIRSYLLTQDQDIDIITERKDGSKPAPAPQSRYSEIKNIPQRSASSDGTTKPAPV
KRESPRQQAATTADYPPVSTSKIDVNAIPIHKPSGKPITQVNIDEDLPADNDKPWRKPGT
DLSDYFNYGFDEFTWALYAQKQEALRAEYNPEAIAQSNKKMMEDMTNMMMMSGIPMPGAA
PPGAAGGAAAGQPMPGMEGVSPELQAMMQQMMASGMDPSQMDMSAMAGMFGGAGAGAGAG
QAGQGPGFGGGYGGAQGQGYGYDQQMGGGGGGGGRGGRGRGRRW
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgacgacgaagacgatttttacgctcccgaagagccacaggcccctgctgcg
cagccgactccccccgcaccatcagcacccgcgaagaaggatgcgaatgacgagctcgaa
gagggcgaggaggaagatgaaggcggggcgatggacgaggatgacgactcggtgcgtacc
gtagttctactggcatacattcgttcgtatctgctgacacaagatcaggatattgacatc
atcaccgagcgcaaggacggctccaaacccgcgcctgccccacaatcacgctacagcgag
atcaaaaacatcccgcagcgctccgcctcctccgacgggacgaccaaaccggccccggta
aaacgcgagtccccccgccaacaagccgccaccacggccgactacccgcccgtgtccacc
tccaagatcgacgtcaacgcgatcccgatccacaagccctcgggcaagccgatcacacag
gtcaacatcgacgaggacctgccggcggacaacgacaagccgtggcgcaagccgggcacc
gacctgtcggactacttcaactacggcttcgacgagttcacgtgggcgctgtacgcgcag
aagcaggaggccctgcgcgccgagtacaacccggaggcgatcgcgcagagcaacaagaag
atgatggaggacatgacgaacatgatgatgatgagcggcatccccatgcccggcgccgcg
ccgccgggcgctgcgggcggggccgccgccgggcagccgatgcccggcatggagggcgtc
tcgcccgagctgcaggctatgatgcagcagatgatggccagcggcatggatccgagccag
atggatatgagcgccatggccggcatgtttggcggcgcgggcgcgggcgcgggcgcgggg
caggccgggcaggggccgggcttcggcggtgggtatggcggcgctcaggggcaggggtat
gggtatgaccagcagatgggaggtggtggcggtgggggaggacgaggcggaaggggacgg
ggaaggaggtggtaa
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