Thermothielavioides terrestris: THITE_2117632
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Entry
THITE_2117632 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITE_2117632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2117632
03036 Chromosome and associated proteins [BR:
ttt03036
]
THITE_2117632
Enzymes [BR:
ttt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THITE_2117632
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
THITE_2117632
mRNA degradation factors
5'-3' decay
Decapping complex
THITE_2117632
Chromosome and associated proteins [BR:
ttt03036
]
Eukaryotic type
Gene silencing
piRNA pathway
THITE_2117632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Neisseria_TspB
NA-iREase2
TFIIA
Motif
Other DBs
NCBI-GeneID:
11519900
NCBI-ProteinID:
XP_003654542
JGI:
Thite2_2117632
UniProt:
G2R8E8
LinkDB
All DBs
Position
3:join(3307419..3307462,3307521..3307593,3307652..3309205)
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AA seq
556 aa
AA seq
DB search
MTDSLVDKLKASTLNDGSGSDDWKKNLRIPAKDTRQQTEDVTNTKGLDFEDFGLKRDLLM
GIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQCLI
LVPTRELAMQTSQVCKTLGKNLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILDLA
SKQVADLSECPMFIMDEADKLLSVEFTPVIEQLLQFHPKDRQVMLFSATFPLSVKDFSDK
NMVSPYEINLMDELTLRGITQYYAYVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELL
AKKITELGYSCFYSHAKMAQQARNRVFHDFRNGACRNLVCSDLLTRGIDIQAVNVVINFD
FPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPQTIDRSLYV
YENPESIPRPISNFKPAAIQQPQPQPQQQQQQQQQQQQQQGQPQNPPAQSQSQASQPRLA
PPAQGDWQGQSSRQNGSGPSGPQGRGGYQGNRGPSGGHRGGRGRGYQGQGGRQSYGGQRG
GRPQGQAQPVPALQQQ
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacagacagtctcgttgacaagctcaaagcctccactttgaatgatggctcgggctca
gacgactggaagaagaatctcaggatcccggccaaggatacaaggcaacagaccgaggat
gtgaccaacaccaagggcctggacttcgaagacttcgggctcaagcgggatctgctcatg
ggcatcttcgaggccggtttcgaaaagccctcgccgattcaagaagagagcataccggta
gctctcaccggccgcgacatccttgctcgcgccaagaacggcaccggcaagactgccgcg
ttcgtcatccctgcgctcgagaagatcaaccccaaggtttccaagatccagtgtctcatc
ctcgtccccacccgcgagttggcgatgcagacctcccaggtctgcaagaccctcggaaaa
aacctaggcatcaacgtcatggtcaccactggtggcactggccttcgcgatgacattgtc
cggcttcaggatcccgtccatattgtggtcgggaccccgggcagaatcctcgatttggct
agcaagcaggtggccgatcttagcgaatgccccatgttcatcatggatgaagcggacaag
ctcctgtccgtcgagttcacccctgtcatcgagcagctgctgcagttccatcccaaggac
cgccaggtcatgctgttctctgccactttccctctctcggtcaaggacttctcggacaag
aacatggtcagcccctacgagatcaacctcatggacgagctcacgctacgcggcatcacg
cagtactatgcctacgtcgaagagaagcagaaggtccactgtctcaacacgctcttctcc
aagctgcagatcaatcagtccatcatcttctgcaactcaaccaaccgcgtcgagcttctc
gccaagaagatcaccgagctcggctattcgtgcttctacagccacgccaagatggctcag
caagcgcgcaatcgcgttttccacgacttccgcaacggtgcttgccgcaacctggtgtgc
tccgatctcctgacccgtggtatcgacatccaggctgtgaacgtcgtcatcaactttgac
ttccccaagaacgccgaaacctaccttcaccggattggtcgttccggccggtacggccat
ctcggtttggctatcaacctgatcaattgggatgatcggttcaatctctacaacatcgag
cgcgacctgggcaccgagattcagcccatccctcagaccatcgaccggagtctctatgtg
tacgagaaccccgagagcattcctcgtcccatctcgaacttcaagcctgctgcaatccag
cagccgcagccgcagccgcagcagcagcagcagcagcagcagcaacagcagcagcagcag
gggcaaccgcaaaacccaccggcacagtctcaatcccaagcttcgcagcctcgccttgca
cctcctgcccagggtgattggcaaggccagagcagtcgtcagaatggctcgggtccctcc
ggcccgcaaggtcgcggaggctatcaaggcaaccgcgggccgtccggtggacatcgtggt
ggccgcggtcgcggctaccagggccagggagggcgccagagctacggtggtcaacgtggc
ggccgcccgcaagggcaggcccaaccagtcccagctcttcagcaacaataa
DBGET
integrated database retrieval system
