Thermothielavioides terrestris: THITE_2120778
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Entry
THITE_2120778 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K12876
RNA-binding protein 8A
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03013
Nucleocytoplasmic transport
ttt03015
mRNA surveillance pathway
ttt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THITE_2120778
09122 Translation
03013 Nucleocytoplasmic transport
THITE_2120778
03015 mRNA surveillance pathway
THITE_2120778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2120778
03041 Spliceosome [BR:
ttt03041
]
THITE_2120778
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
THITE_2120778
Spliceosome [BR:
ttt03041
]
Complex C
Other components
EJC/TREX
THITE_2120778
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
11519262
NCBI-ProteinID:
XP_003656330
JGI:
Thite2_2120778
UniProt:
G2RDR3
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All DBs
Position
5:complement(join(762485..762739,762846..763121))
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AA seq
176 aa
AA seq
DB search
MAPDEMEIDEAVPPQAPGNNSSSSNNDISAAKLAAMQTRTKATAVRSIEGWIVMVTNVHE
ETDEEAIHDKFGEFGEIRNVHLNLDRRTGYVKGYALIEYTTLEEARAAIDGANGTQLLDQ
TVQVDFAFVRPPPGKAIARPGGGGGGGGGPVRGSNRGARSGRSRSRSPGAPKEDVL
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgacgagatggaaatcgacgaggccgtcccgccccaggccccgggaaacaac
agcagcagcagcaacaacgacatcagcgccgcgaagcttgccgccatgcagacgcgaacc
aaagccaccgccgtccgatccatcgagggctggatcgtgatggtgaccaacgtgcacgag
gagaccgacgaggaggccatccacgacaagttcggcgagttcggcgagatccgcaacgtg
cacctgaacctggaccgccggacgggctatgtcaagggctacgcgctgatcgagtacacg
acactggaggaggcgcgcgcggcaatcgacggcgccaacggcacccagctgctggaccag
accgtgcaggtggactttgccttcgtgcggcccccgccgggcaaggccatcgcgcggccg
ggcggcggcggcggcggcgggggcgggccagtgcgggggtcgaatcgcggggcgcgaagc
ggccggagtcgaagccggagtccgggggcgcctaaggaggacgtcctgtga
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