Thermothielavioides terrestris: THITE_2122009
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Entry
THITE_2122009 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THITE_2122009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ttt03041
]
THITE_2122009
Spliceosome [BR:
ttt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
THITE_2122009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
PRP4
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_SCAP
WDR54
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_RIG_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Nbas_N
DUF3752
Motif
Other DBs
NCBI-GeneID:
11519324
NCBI-ProteinID:
XP_003656827
JGI:
Thite2_2122009
UniProt:
G2RFK8
LinkDB
All DBs
Position
5:join(2491081..2491128,2491230..2491260,2491315..2492837)
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AA seq
533 aa
AA seq
DB search
MIHPSRRAYVEEAETEDRGGVDLHSIPIDRDYDIPSAGAGIAPEKASALLSKFERKRLAA
TIAVPTDDGRVRAKLRELGEPITLFGEGPADRRDRLRELLTEQATQAQQAARQEGADVEM
AEAGEEEEEEEAEEQEEEFYSRGTDELLQARINIAQYSIPRAKRRIEFQKKEASISLRAH
VKFRKGIKERLQTFELQGSQAAGDRHVSMTRISPSGKIVATGNWGGQVKLIDVPSLEHKR
TLRGHTNKISGISWMPGATLPERNVSEETVNLASGGAEGQIHLWSLTQDTPLSTLSGHSQ
RVCRVEFHPSGKYLASASEDTSWRLWDVEKSTELLLQEGHSRGVYAVSFNTDGSLLASAG
LDSIGRIWDLRSGRTVMILDGGTDGHIKPIYGLDWGSDGHRVLTASADGWIKCWDVRKVQ
RTGGIGAHTSAVSDVRWFKGLDDPLEGTPPGEDEKGMQMPKKSGTFLVSSGFDHKINIFS
ADDWALVQSLSGHTGPVASVDVSRDGRWIVSGGHDRTVKLWGRNDATGLYGDD
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgatacatccatcgcgcagggcatatgtggaggaggcggaaacggaggatcgtggcggt
gtcgatttacattctatccccatcgaccgggactatgacatcccaagcgctggggctggc
atcgcacctgagaaggcgtcggcgcttctctcaaagttcgagcggaagaggttggcagca
accatagctgttcccaccgacgatggacgggtgcgcgctaagcttcgggagctgggcgag
cccatcacactcttcggcgagggcccggccgacagacgcgacagactgcgagagctgctc
accgagcaagcaacacaggcacagcaagcagcccgccaggagggcgccgacgtggagatg
gcggaggccggggaagaggaggaggaagaggaagccgaagagcaggaggaggagttctac
tcccggggaacagacgaactgctacaggctcggataaacatcgcccaatactcgatccca
cgagcgaagcggcgcatcgagtttcagaagaaggaagcgagcatctcgttgcgcgcacat
gtcaagttccgcaagggcatcaaggaacggctgcagacgttcgagctccagggcagtcag
gctgccggagaccgacacgtcagcatgacacggatatcgccgagcgggaagatagtggca
acaggcaactggggcggacaggtcaagctcattgacgtcccgagtctggagcacaagcgg
acgttgagaggccataccaacaagatcagcggcatctcttggatgcccggcgctaccctg
cctgagcgcaacgtctcggaagagacagtcaatctagcatccggtggtgcagagggccag
atccacctctggtccctgacacaggacacccctctctcgacgctctccgggcactcgcag
cgagtatgccgggttgaattccacccttccgggaagtacctagcctcggcgtcggaagac
acctcgtggcggctatgggatgttgagaagtcgacggaactgcttttgcaagaggggcat
tcgcgcggcgtctacgccgtcagcttcaacaccgacggatcgctactcgccagcgcgggg
ctcgacagcatcgggcggatctgggatctgcgctcgggacgcacggtcatgatcctggac
ggcggcacggacgggcatatcaagcccatctacgggctcgattggggctcggacggccac
cgggtcctgacggcctctgctgacgggtggatcaagtgctgggacgtcaggaaggtgcag
cggacggggggcatcggcgcgcacacgagcgcggtgtccgatgtcaggtggttcaagggc
ctcgacgacccgctggagggcactccgccgggcgaggatgaaaagggcatgcagatgccc
aagaagtcgggcaccttcttggtctcgtccggcttcgaccacaagatcaacatcttctcg
gcagacgactgggctctggtgcagtcgctcagcggccacacggggcccgtcgcgagcgtg
gatgtgagcagggacgggaggtggattgtgagcggaggccatgaccggacggtgaagctg
tgggggaggaacgacgcgacggggttgtacggcgacgactag
DBGET
integrated database retrieval system
