Thermothielavioides terrestris: THITE_2123200
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Entry
THITE_2123200 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
THITE_2123200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttt03021
]
THITE_2123200
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2123200
Transcription machinery [BR:
ttt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
THITE_2123200
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
THITE_2123200
U7-dependent histone pre-mRNA processing factors
THITE_2123200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
CHB_HEX_C
Motif
Other DBs
NCBI-GeneID:
11522085
NCBI-ProteinID:
XP_003657462
JGI:
Thite2_2123200
UniProt:
G2RGZ7
LinkDB
All DBs
Position
6:join(651199..651351,651435..651532,651884..653015,653078..653744,653822..654351)
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AA seq
859 aa
AA seq
DB search
MASKRKAAAMSSAAPEEPVDPADELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAY
DGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLI
QDSVRVGNTSSNPTTQLVYTEQDHLNTFPMIEAIDYHTTHTISSIRITPYPAGHVLGAAM
FLIEIAGLNILFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGVASHIPRLEREQALM
KSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHKEYQKYPIYYASNLARKCMLVYQ
TYVGAMNDNIKRLFRERMAEAEASGDAAGKGGPWDFKFIRSLKSIDRFDDVGGCVMLASP
GMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQLMQEPDQIQAVMTRSSAGGRRAP
GGDAEKVMIPRRCTVQEFSFAAHVDGTENREFIEEVGAPVVILVHGEVHNMMRLKSKLLS
LNANKTEKVKVYSPRNCEELRIPFKTDKTAKVVGKLASIPQPMKMPKDDNAQEPQLITGV
LVQNDFKMSLMAPEDLREYAGLTTTTITCKQRLRLTAAGIDLIKWGLEGTFGSIEELPEA
KRHHENGTNGDKKDYSKMDEDVDEEYPIDEVVAAYLVMGCVTVRYRTSGEVELEWEGNML
NDGIADAVMAVLLGIESSPAAVKRSASKHSHSHATDSSSSITLPTRNLHANLTPADRLER
LMLFLEAQFGADNVSPIAEPKLPSPPPSPPAPTTTSSSPSPSATSSNGAASMDVSDDDND
QQQREQSKQQQQLEQQQQAELARLHKLGIPVPGVRIKVDKMEARVWLEGLEIECANKVFA
DRVRAVVERAVEVTAPLWG
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaagcggaaggccgctgcaatgtcctcggccgctcccgaggagcccgtcgac
ccggccgacgagctgatgttcctgtgtctgggcggcggcaacgaggtcggccgttcatgc
cacatcatccagtacaaggggaagaccgtcatgctggatgctggtcaacacccggcctat
gacgggctagcagcgctccccttcttcgacgacttcgatctcagcaccgtggatgtgctc
cttatcagccatttccacatcgaccatgcggcctcattaccatacgtcctggccaagacg
aacttccgcggccgcgtcttcatgacccaccccaccaaggccatctacaagtggctgatc
caggacagcgttcgcgtcggcaacacgtcgtcgaacccgacgacccagctcgtgtacacc
gagcaggaccacctgaacaccttccccatgatcgaggccatcgactaccacaccacccac
accatctcatctatccgcatcaccccctatccggccggccacgtcctcggcgccgccatg
ttcctgatcgagatcgcggggctcaacatcctcttcaccggcgactactcccgcgagcag
gaccgccatctggtgtcggccgaggtgcccaaaggtgtcaagatcgacgtgctcatcacc
gagtcgacctacggcgtcgcttcccacatcccgcgcctggagcgcgagcaggcgctgatg
aagtccatcaccggcatcctcaaccgcggcggccgcgtgctcatgcccgtctttgctcta
ggccgcgcgcaggagctgctcctcatcctcgacgagtactggggcaagcacaaggagtac
cagaaataccccatctactacgcaagtaacctcgcccgcaagtgcatgctggtctaccag
acctacgtcggcgccatgaacgacaacatcaagcgcctcttccgcgagcgcatggccgag
gccgaggcgtcgggcgacgccgcaggcaagggcgggccctgggacttcaagttcatccgc
tcgctcaagagcatcgacaggttcgacgacgtcggcggctgtgtcatgctggccagcccc
ggtatgctgcagaacggcgtgagccgagagctgctcgagcggtgggcgccgagcgagaag
aacggcgtcatcatcacgggctacagcgtcgagggcaccatggccaagcagctcatgcag
gaacccgatcagatccaggccgtcatgacgcggagctcggccggcgggaggcgagcgccc
ggaggcgacgccgagaaggtcatgattcctcgccgctgcaccgtgcaggagttctcgttc
gccgctcacgtcgacggcaccgagaatcgggagttcatcgaggaagtcggcgctccggtg
gtgatccttgtccacggcgaggtgcacaacatgatgcggctcaagtccaagctgctgtcg
ctcaacgcaaacaagacagagaaggtcaaggtctacagcccgcgaaactgcgaggagctc
cgcatccccttcaagacggacaagacggccaaggtggtcggcaagctagcctcgatcccg
cagcccatgaagatgcccaaggacgacaatgcccaagagccgcagctcatcacgggcgtg
ctggtccagaacgacttcaagatgtcgctgatggcgcccgaggacctgcgcgagtacgcc
ggcctcacgaccacaaccatcacctgcaagcagcgcctccggctgaccgccgccggcatc
gacctgatcaagtggggtctcgagggcaccttcggcagcatcgaggagctgcccgaggcc
aagcggcaccacgagaacggcacgaacggcgacaaaaaggactacagcaagatggacgag
gacgtggacgaggagtaccccatcgacgaggtcgtcgccgcctatctcgtcatgggctgc
gtgaccgtccgctaccgcaccagcggcgaggtggagctcgagtgggagggcaacatgctc
aacgacggcatcgccgatgccgtaatggccgtgctcctcggcatcgagagcagccccgcc
gcagtgaagcggtccgcaagcaaacactcccactcccacgccaccgactcctcctcctcc
atcaccctccccacccgcaacctgcacgccaacctcaccccggccgaccgcctggagcgc
ctcatgctcttcctcgaagcccagttcggcgccgacaatgtctcgcccatcgccgagccc
aagctgccctcgccgcccccctccccgccagcacccaccaccacctcctcctcgccctcc
ccctccgccacctcctccaacggcgccgcctccatggacgtatccgacgacgacaacgac
cagcagcagcgcgaacagagcaaacaacaacaacaactagaacagcagcagcaggccgag
ctggcgcgcctgcacaagctgggcatccccgtgccgggcgtgcgcatcaaggtcgacaag
atggaggcgcgcgtctggctcgagggcctcgagatcgagtgcgccaacaaggtctttgcc
gaccgcgtgcgcgccgtcgtcgagagggccgtcgaggttactgcgccgctgtgggggtaa
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