Thermothielavioides terrestris: THITE_2123361
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Entry
THITE_2123361 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITE_2123361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2123361
03041 Spliceosome [BR:
ttt03041
]
THITE_2123361
03009 Ribosome biogenesis [BR:
ttt03009
]
THITE_2123361
03016 Transfer RNA biogenesis [BR:
ttt03016
]
THITE_2123361
Enzymes [BR:
ttt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
THITE_2123361
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
THITE_2123361
Spliceosome [BR:
ttt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
THITE_2123361
Complex C
U4/U6.U5 tri-SnRNP related factors
THITE_2123361
Ribosome biogenesis [BR:
ttt03009
]
Eukaryotic type
Pre-60S particles
Helicases
THITE_2123361
Transfer RNA biogenesis [BR:
ttt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
THITE_2123361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Prp19
nSTAND3
ATPase_2
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
11521967
NCBI-ProteinID:
XP_003657536
JGI:
Thite2_2123361
UniProt:
G2RH88
LinkDB
All DBs
Position
6:complement(join(916297..916477,916564..919655))
Genome browser
AA seq
1090 aa
AA seq
DB search
MDDLFAVFEEQPRAPKRKATADADVDMADGVGVGGGGSDRGSDRDSGKTQHAATKVKVEE
TQVADEESTTNGTSSDAHGRGDNKRRKTEEEAEPIITDTFETAESREVKAAEGFAPSTDQ
ASLVLSHNIQHQVALPPDLDYEYIPLSEHKPPAEPARVYPFRLDPFQALSVASIERDESV
LVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFQADFGDVGLMTGDVT
INPTASCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDKTRGVVWEETIILLPDKV
RYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYFFPAGSNGIYLIVDEKGN
FKENNFNEAMAKIESKKGSDPADWSAKQKGRGKNKKTNKGGEAPAEQSDIAKVIKMIIRK
KFHPVIVFNFSKHECEQMALNTSVMKFNAPDEEAMVVQVFENAINQLSEDDKNLPQISNI
LPLLRKGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKW
DGVQRRPLTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPDVARSVVVGHQDRLNSAFH
LGYNMILNLLRIEAISPEFMLERCFFQFQNAHGVPQLERELASLQQERDSMMIPDESTVK
EYRTIRQQLDGYQKDMISVMQHPTYCLKFMKPGRAVHIVAPDGTDFGWGVVLDFVARKRP
KFGQPDWPPQESYFIDVLLRVSSGSPEVSSLLKGDTAVPPGVVPAERGDKGRWEVVPCLL
SCMKALSQIRLHLPKNAASAEQREMVGKMLLEAQRRLPDGVPVLDPLENMGIRDESFKKL
LRKIEVLESRLIANPLHNSPLLDELWPRLDAKLALGEKIKEKKRAIAKAHSVAQLDELKS
RKRVLRRLGFINEAEVVQMKARVACEISSTEGHELLLAELLFNRFFNEMAPELCAAVLSV
FVFDEKVEATELREELAKPLREIQAQARVIAKVSAESKLEVNEDEYVQSLKWQLMETVLA
WANGRPFSEVCKMANVYEGSLIRVFRRLEELLRQMAEAGRVMGSEELKEKFEASLSRIRR
DIVSVNSLYL
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctcttcgccgtgttcgaggagcagcctcgcgctcccaagcgcaaggccaca
gctgacgccgatgtcgacatggcggacggtgtcggcgtcggcggcggcggcagcgaccgg
ggcagcgaccgggacagcggcaagacccagcacgctgccaccaaggtaaaagttgaagag
acacaagtcgcagacgaagagtcaacaacaaatggcacatcatcggatgcccatgggcgc
ggcgacaacaagcggcgcaagacagaagaggaggccgagcccatcattacggacacgttc
gagacggccgaatcccgagaagtcaaggcggccgagggcttcgctccctcgacagaccag
gcctcgctcgtgctgtcgcacaatatccagcaccaggtcgcgctgccgcccgacctcgac
tacgagtacatcccgctctcggagcacaagccgcccgcagagccggcgagggtgtatccg
ttccgcctagaccccttccaggccttgtcggtggcctccatcgagcgcgacgagagcgtg
ctggtctcggcccacaccagcgccggcaagaccgtcgtcgccgagtacgccatcgcccag
tgcctcaagcggaaccagcgggtcatttacaccagccccatcaaggcgctcagcaaccag
aagtaccgcgacttccaggccgactttggcgacgtcggcctgatgacgggcgatgttacc
atcaacccgaccgccagctgcctggtcatgaccaccgagattctgcgctccatgctatac
cgcggctccgagatcatgcgcgaggtcgcctgggtcatctttgacgagatccactacatg
cgcgacaagacgcgcggcgtcgtctgggaggagaccatcatcctgcttccggacaaggtt
agatacgtcttcctatcggccaccatccccaacgccttccagttcgccgaatggatcgcc
aagatccaccgccaggcctgccacgtcgtctacaccgacttccggccgacgccgctgcag
aactacttctttccggccgggagcaacggcatttatctcatcgtcgacgagaagggaaac
ttcaaagagaacaacttcaacgaggccatggctaaaatcgagagcaagaagggctcggac
ccggccgactggagcgccaagcagaagggacgcgggaaaaacaagaagaccaacaagggc
ggcgaggcccccgccgagcagtccgacatcgccaaggtcatcaagatgatcatcaggaag
aagtttcatcccgtcatcgtcttcaacttcagcaagcacgagtgcgagcagatggcgctc
aacacttccgtcatgaagttcaatgcgccggacgaggaagccatggtcgtccaggtgttc
gaaaatgcgatcaatcagctgtccgaggacgacaagaatctgccccagatcagcaacatc
ctgcccctgctgcgcaagggcatcggcgtccaccactcgggcctactacccatcctcaag
gagaccatagagattctgttccaggagggtctcatcaaggtgctgtttgcgaccgagacc
ttctccatcggcctcaacatgccggcgaggacggtcgtcttcacccaggtcaccaagtgg
gacggcgtccagcggcggccgctgacctcgtccgagtacatccagatggccggacgggcc
gggcgccgcggtctcgacgaccgcggcatcgtcatcatgatggtcgacgacaagctcgag
cccgatgtggcccggagcgttgtcgtcggccaccaggaccggctaaactcggccttccac
ctcggctacaacatgatcctcaatctgctgcgcatcgaggccatctcgcccgagttcatg
ctcgagcggtgcttcttccagttccaaaacgcccacggcgtgccgcagctggagcgggag
ctcgccagcctgcagcaggagcgcgacagcatgatgatacccgacgagagcaccgtcaag
gagtaccgcaccatccgccagcaactggacggctaccagaaggacatgatcagcgtgatg
cagcacccgacctactgcctcaagttcatgaagcccggccgcgccgttcacatcgtggcg
ccggacgggaccgacttcggctggggtgttgttctcgactttgtcgcgcgcaagcgcccc
aagtttgggcagccggactggccgccgcaagaatcctacttcatcgacgtcctgctcagg
gtctcgtccggtagccccgaggtgagctcgctgctcaagggcgacacggccgtgcccccg
ggcgtcgtgccggccgaacgcggcgacaagggccggtgggaggtagtgccgtgcctgctg
agctgcatgaaggcgctcagccagatccggctgcacctgcccaagaacgcggcgtcggcg
gagcagcgggagatggtgggcaagatgctcctggaggcgcaacggcggctccccgacggc
gtcccggtgctggacccgctcgagaacatgggcatcagggacgagtcgttcaagaagctg
ctgcgcaagatcgaggtgctcgagtctcgcctgatcgccaacccgctgcacaactcgccg
ctgctcgacgagctgtggccgcggctcgacgccaagctcgcgctcggcgagaagatcaag
gagaagaagcgggccatcgccaaggcgcacagcgtggcgcagctcgacgagctcaagtcg
cgcaagcgcgtgctgcgccgcctcggcttcatcaacgaggccgaggtggtgcagatgaag
gcgcgcgtcgcctgcgagatctcgtcgaccgagggccacgaactgctgctggccgagctg
ctcttcaaccgcttcttcaacgagatggcgccggagctgtgcgccgccgtgctcagcgtc
ttcgtcttcgacgagaaggtcgaggccaccgagctgcgggaggagctggccaagccgctg
cgcgagatccaggcgcaggcccgcgtcatcgccaaggtcagcgccgagagcaagctcgag
gtcaacgaggacgagtacgtgcagagcctcaagtggcagctcatggagacggtgctggcc
tgggcgaacgggcggccgttttccgaggtgtgcaaaatggccaacgtctacgagggctcg
ctgatccgcgtgttccgccggctcgaggagctgctgcggcagatggccgaggccggcagg
gtcatgggcagcgaagagctcaaggagaagttcgaggccagcctgtccaggatacggcgc
gacattgtctcggtcaacagtctgtatctgtag
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