Teredinibacter turnerae: TERTU_0480
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Entry
TERTU_0480 CDS
T00952
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ttu
Teredinibacter turnerae
Pathway
ttu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ttu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TERTU_0480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttu03021
]
TERTU_0480
Transcription machinery [BR:
ttu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TERTU_0480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
Sporozoite_P67
Motif
Other DBs
NCBI-ProteinID:
ACR14128
UniProt:
C5BMY7
LinkDB
All DBs
Position
complement(497222..499081)
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AA seq
619 aa
AA seq
DB search
MSEQQQSRIKELINRGREQGYLTYDEVNDHLPDDISDPDQVEDIIQMINDMGIRVYEVAP
DADELLMTDGEASPDEIAAAEAAAALAAVETEAGRTTDPVRMYMREMGTVELLTREGEIA
IAKRIEEGLRELMHALAFWPNAVQQIMDEYDLVEKEERRLNDVISGWLDPAEEVEAATPV
DSTDNNTKNDADDEDDSDDDEDEDDDSSSDEDENNSGIDPEYARERFDELRVQLVAANDA
IAKHGLDSKETGVALEALGEVFKFFKLAPRQFDPIYNYVRDVLARIRAEEKEIMRLCVRM
AGMPRKTFVKEFPGNEINEDWIPEIIRKKRDYSDSLRPVEGDILRSQRKLQQIEEETGLE
LTAIKEINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM
GREPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTITSPVES
ATSQGLMEATKAVLAGLTAREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDHLRGFLDD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacagcagcagtctcgtatcaaagaattgataaaccgaggccgagagcagggc
tacctgacctacgacgaagtaaacgaccatctgccagacgacatttccgatcccgatcag
gttgaagacatcatccagatgatcaacgacatgggtattcgtgtttatgaagtagcaccg
gatgccgatgaattgctgatgactgacggcgaagcctcgcccgacgaaatcgccgctgca
gaagccgccgccgcacttgccgccgtagaaaccgaagccggccgcaccaccgaccctgtg
cgtatgtacatgcgcgaaatgggtaccgtggaactgctcacccgcgaaggtgaaatcgcc
attgccaagcgcatcgaagaaggtctgcgtgaacttatgcacgccctcgccttctggcca
aacgccgtgcagcagataatggacgagtacgacctggtggaaaaagaagagcgccgctta
aacgacgttatcagcggctggctggacccggccgaagaagtcgaagccgctacccccgtc
gactccaccgacaacaacactaaaaacgacgctgacgacgaagatgacagcgatgacgac
gaagacgaagacgacgattcctcctcagacgaagacgagaacaactcgggaatcgacccg
gagtacgcgcgcgaacgtttcgacgaactgcgtgtacaactggtagccgctaacgacgcc
atcgccaaacacggcctcgacagcaaagaaaccggcgttgcgctggaagccctgggcgaa
gtctttaagttcttcaaactcgcgccacgccagttcgatccaatctacaactacgtacgc
gacgtactcgcgcgtattcgtgccgaagaaaaagaaatcatgcgcctgtgcgtgcgcatg
gcgggtatgccgcgcaaaacctttgtgaaggaattccctggcaacgagatcaacgaagat
tggatcccagagattatccgcaagaagcgcgactactccgacagcctgcgtccggtcgaa
ggtgacattctgcgttcgcagcgcaagttgcagcagatcgaggaagaaaccggcctcgag
cttaccgcgatcaaggaaatcaaccgtcgcatgagcatcggcgaagcccgtgcccgccgc
gcgaaaaaggaaatggtcgaagccaacctgcgcctggtgatctctatcgccaaaaagtac
accaaccgtggcttgcagttcctcgacctgatccaggaaggcaacatcggcttgatgaag
gcggtcgacaagttcgaataccgtcgcggctacaagttctccacctacgccacctggtgg
attcgacaggccatcacccgctccatcgcggaccaggcccgcaccatccgtattccggtg
cacatgatcgaaaccatcaacaagctcaatcggatttctcgccaaatgctgcaggaaatg
ggtcgcgaacccaccccggaagagctgggcgaacgcatggaaatgccggaagacaaagtg
cgcaaagtcctcaaaatcgctaaagagccgatctccatggagacgcccatcggcgatgat
gaagactcgcatctgggcgactttatcgaggacaccaccatcacctcgccggtggaaagc
gccacctcgcaaggcctgatggaagccaccaaagcggttcttgctggccttaccgcccgc
gaagccaaagtactgcgcatgcgtttcggtatcgaaatgaacaccgaccacaccctcgag
gaagtgggcaaacagttcgacgtaacccgcgaacgtattcgccagatcgaagccaaggcc
ctgcgcaaactgcgccaccccagccgctccgatcacctgcgaggcttcctcgacgactaa
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