Teredinibacter turnerae: TERTU_0884
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Entry
TERTU_0884 CDS
T00952
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ttu
Teredinibacter turnerae
Pathway
ttu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ttu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TERTU_0884 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttu03021
]
TERTU_0884 (rpoC)
03400 DNA repair and recombination proteins [BR:
ttu03400
]
TERTU_0884 (rpoC)
Enzymes [BR:
ttu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TERTU_0884 (rpoC)
Transcription machinery [BR:
ttu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TERTU_0884 (rpoC)
DNA repair and recombination proteins [BR:
ttu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TERTU_0884 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ACR11035
UniProt:
C5BQ40
LinkDB
All DBs
Position
934119..938342
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLLKNQGQTDEFDGIRIGLASPDMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTLAKVRRERMGHIELACPTAHIWFLKSL
PSRIGLLLDMTLRSIERVLYFESFVVTDPGMTTLERGQLLTDEQYFESMEEFGDEFEAKM
GAEAIQQLVRDIDLEKEAQEIREEIPTTNSETKIKKLSKRLKLLEAFIQSGNKPEWMILE
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVTGPT
LRLHQCGLPKKMALELFKPFIFSKLELRGLATTIKAAKKMVEREEPVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYWMTRERVNDLGEGMVFSDTKEVSRAFYAR
KIGLQAKIKVRIRQAVMREDGEIEESTSLSETTVGRVLLWEIVPDGIPFEMVNRPMVKKA
ISAIINFCYRVVGLKATVIFADQLMYMGYDFSTKSGSSIGVNDFEIPAEKATIIDSAEAE
VKEIESQYASGLVTQGEKYNKVIDIWSRANDLVAKSMMEGISKEAVTNRDGDEEKQDSFN
SVYMYADSGARGSPAQIRQLAGMRGLMARPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITSPDCGTDEGLTMAPVIEGGDIIESLGDRIL
GRVVARDVVRPGTDEILIPAGTIIDEKWVERVEVMGIDEVIVRSAITCESRHGICAQCYG
RDLARGHRANIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAADSIQIKQDGTVRL
HNIKVVTRSSGELVAVSRSGELAVADSAGRERERYKVPYGAVISVKDGEEVKGGSFIAKW
DPHTHPIITEVAGRVALTGMEDGLSIRKQTDELTGLSSIEVMDTGERPSSGKDLKPAVTL
VDENGNEVMLAHANQPAHYMLPGKSILSLSNGDNVGVGDVIARIPQEGSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPLNGETLADGSTSYEVLIPKHR
QLTVFEGENVAKGEVVSDGPSNPHDILRLQGVEALARYIVNEIQEVYRLQGVKINDKHIE
VIVRQMLRKAEITSMGDSDFVKGEQVEYNNVLEENEKLRANSRQPAQYERQLLGITKASL
ATESFISAASFQETTRVLTEAAVTGKLDNLRGLKENVVVGRLIPAGTGLAYHNERRRRRE
EDHGSADSVSAAEVEAALTEALRSTSS
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttacttaacttgttgaaaaaccagggccaaactgacgagttcgatggtatc
cgcatcggcctcgcctcgcccgatatgattcgctcctggtcgtttggtgaagtgaaaaag
ccagagaccattaactaccgtacgtttaagccagagcgtgaaggtttgttctgcgccaaa
atttttggcccggttaaggattacgagtgcttgtgcggcaaatacaagcgcatgaagcac
cgcggtattatctgtgagaagtgtggcgttgaagtgaccttggcgaaagttcgccgtgag
cgcatgggccatatcgaacttgcttgcccgactgcgcacatctggtttttgaaatcgctg
ccaagccgcatcggtttgttgctggacatgactctgcgcagcattgagcgcgtgctgtac
tttgaatccttcgttgtcaccgatcccggcatgacaaccttggagcgcggtcagctgctg
actgacgagcagtacttcgagtctatggaagagttcggcgacgaattcgaagcgaagatg
ggcgctgaagcgattcagcagctggttcgcgatatcgacctggaaaaagaagcgcaggaa
attcgcgaagaaattccgacgaccaattccgaaaccaaaatcaagaagctttccaagcga
ctcaagttgctcgaagcgtttatccagtctggcaacaaacccgagtggatgattttggaa
gccctgcccgtgctaccaccggatctgcgtccgttggtaccgctggatggtggacgtttc
gctacgtccgacctgaacgatttgtaccgtcgtgttatcaaccgtaacaaccgtctgaag
cgactgctggatctgaacgctcccgatatcatcgtgcgcaacgaaaaacgtatgctgcag
gagtcggtcgatgcgctgctggataacggtcgtcgcggccgagccattaccggctccaac
aagcgaccgctgaaatctctggcagatatgatcaaaggtaaacagggccgtttccgtcag
aacctgctgggtaagcgtgtggactactcgggccgttccgtaattgtgaccggtccgact
ctgcgtttgcaccagtgtggtctgcctaagaaaatggcactcgagctgtttaagcctttc
atcttcagcaagctggaactgcgtggtcttgcgaccacaattaaagcggcgaagaaaatg
gttgagcgcgaagagcccgtggtgtgggatatcctcgatgaggttattcgtgagcacccg
gtattgctgaaccgcgcaccgacacttcaccgtttgggtatccaggcatttgaaccggtg
ctgattgaaggtaaagcgatccagctgcacccgctggtgtgtgcggcatataacgccgac
ttcgacggtgaccagatggcggttcacgtaccgctgacgctggaagctcagctcgaagcc
cgtgcgctgatgatgtccaccaataacattctttcacctgcctctggtgagccaattatc
gttccttctcaggacgttgtattgggcctgtactggatgacacgcgagcgcgttaacgat
ctcggcgaaggtatggtgttctccgacaccaaagaagtttcgcgtgcgttctacgcccga
aaaattggtcttcaggcgaaaattaaagtgcgtattcgtcaggcggtgatgcgtgaagac
ggcgaaatagaagagtctacctctctgtcagaaacaactgtcggccgcgtgcttttgtgg
gaaattgtcccggatggcattccgttcgagatggttaaccgcccgatggttaaaaaagcc
atatctgcgattatcaacttctgttatcgcgttgttggtttgaaagcgacggttatcttt
gctgaccaactcatgtatatgggttatgacttcagtactaaatccggttcttccatcggt
gttaacgacttcgagattcccgcggaaaaagcgacaatcatcgatagcgccgaagctgaa
gttaaagagatcgaaagccaatacgcttccggtctggtaacccagggcgaaaagtacaac
aaggtaatcgacatctggtcccgcgccaacgacttggtagcgaagtccatgatggaaggt
atctccaaagaagccgtaaccaaccgcgacggtgacgaagagaagcaagattccttcaac
tctgtatatatgtatgcggactccggtgctcggggttcgcccgcacagattcgtcagttg
gccggtatgcgcggcctgatggcacgtccggatggctccattatcgaaacgccgattgtg
gctaacttccgcgaagggttgaacgtactccagtacttcatttcgacgcacggtgcgcgt
aaaggtttggcggataccgcactgaaaaccgcgaactcgggttacctgacccgccgattg
gtggacgttgcacaagacgtggttattacttcgcccgactgtggtaccgacgaaggcctg
actatggcgcccgttattgagggtggtgacatcatcgagtcgctgggtgatcgtatcctt
ggccgagtggttgcacgggatgttgtgcgccctggtaccgacgagatcctgattcctgcc
ggcacgattatcgacgagaaatgggtcgagcgcgttgaggtgatgggtattgatgaagtt
atcgtgcgctctgcgatcacatgtgaaagccgccacggtatctgtgctcagtgctatggc
cgcgatcttgctcgtggtcaccgagctaacattggtgaagctgttggtgttatcgcagcg
cagtcgattggtgagccgggtactcagctgaccatgcgtacgtttcacattggtggtgct
gcgagccgggcgtctgccgccgacagtattcagattaaacaggacggtactgtacgcctg
cacaacattaaagttgtgactcgttccagtggcgagttggttgctgtcagtcgctctggc
gaactggctgttgccgatagtgccgggcgcgagcgcgaacgctataaagtaccttacggt
gcagtcatttcagtcaaagatggcgaagaagttaaaggcggttcgtttattgcgaagtgg
gatcctcacacgcaccccatcattactgaagttgctggtcgtgttgcgttgaccggtatg
gaagatggcttgtcgatccgcaaacaaacagatgaattgaccggcctctccagtatcgag
gttatggatacgggtgaacgtccatcatcaggtaaagacttgaagccggcagtgacgctg
gtggatgaaaacggcaatgaagtgatgttagcgcacgccaatcagcctgcgcactacatg
ttgccaggtaagtcgatcttgtcgttgagcaatggcgacaatgttggcgttggtgacgtt
attgcgcgtatcccgcaagaaggttccaaaacccgcgacatcaccggtggtctgccacgc
gttgccgatttgtttgaagcacgtaagccaaaagagcctgcaattcttgcggaaatttcc
ggcaccatttccttcggtaaagaaaccaaagggaagcgtcgcctggtgattacaccgctg
aatggcgaaactctggctgacggttcgaccagctacgaagtgcttattccgaaacatcgc
cagttgaccgtgttcgaaggtgagaacgtggcgaaaggtgaagttgtttccgatggtccg
agcaaccctcacgacattctgcgtttgcagggcgtggaggcgctggctcgctatatcgtt
aacgaaatccaggaggtttaccgcctccagggtgtaaaaattaacgataagcacattgaa
gttattgttcgtcaaatgctgcgtaaagctgaaatcacctcgatgggtgattccgatttc
gttaaaggcgagcaggttgaatacaacaatgtcttggaagaaaacgagaagctgcgtgct
aatagtcgtcaaccagcgcaatacgagcgccagttactgggtattaccaaagcgtctctg
gcaactgaatcgtttatttctgcggcttcgttccaggaaacaactcgcgtccttaccgaa
gcagctgtcaccggcaagctggataacctgcgcggcctgaaggaaaacgtggtcgttggg
cgtttgattcctgcgggcaccggtttggcgtatcacaatgaacgtcgtcgtcgtcgcgaa
gaggaccacggttctgccgatagtgtaagtgctgcagaagtagaagctgcactgaccgag
gcactgcgttctacgtcgtcttaa
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