Teredinibacter turnerae: TERTU_1948
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Entry
TERTU_1948 CDS
T00952
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ttu
Teredinibacter turnerae
Pathway
ttu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ttu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TERTU_1948 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttu03400
]
TERTU_1948 (mfd)
Enzymes [BR:
ttu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TERTU_1948 (mfd)
DNA repair and recombination proteins [BR:
ttu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TERTU_1948 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
DUF4743
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACR10858
UniProt:
C5BII0
LinkDB
All DBs
Position
complement(1986648..1990121)
Genome browser
AA seq
1157 aa
AA seq
DB search
MKDATFLPEIPTKPNDKRSWGQLIGSSGAALSIVESAQNFSGNCVVVAPDMATAEIFKSD
IEVLQKGRNNGRKVYLFNDWETLPYDSFSPHQDIISERMRCLYHLHASDNCIIIVASSTL
LQRLPPTDYILSHSLVLKVNDQLDREEFRHHLTNSGYTSVDTVYQHGEFAVRGALIDVYP
MGSRAAYRIELFDDSVDSLREFDPETQRTITQVESIELLPGKEFPFDKAGINAFKSRWYE
TFDVDHSACPVFQDISSGLSPAGVEYYLPLFFDETATLFDYLADAPEKTLLFVHEKVPQA
IENHWKDIESRYLSRNGDRERPILPTHRAFHPVNALYSAMKPYPRVTLYNQSIVEGKGSD
NLMLSTSPALSVDSKANNPLHLLESFLNRTDKRVLFCAESSGRKETLKEQLKKIGVRPEE
STSVFSFLESQQKIAITVAQLDNTVNCQQPGFILIAEQQLFGNRVQQRRRRSKNAEDPDN
IIKNLTELKLDAPVVHLDHGVGRYKGLQTIEHDGQADEFLVLAYADDTKLYVPVANLHMI
SRYSGADPALAPLHRLGSETWQKAKRKAAEQIRDVAAELLEIYAKRKARQGFSYDNPKEA
YDQFAAGFPFEETPDQQSAIRAVRDDMLSAQPMDRLVCGDVGFGKTEVAMRAAFIAVQNS
KQVAVLVPTTLLAQQHFDNFKDRFADWPVNIEVVSRFRSQKELTNVQQRLEQGSVDILIG
THKLILGDFKYPNLGLVIIDEEHRFGVRQKEALKALRTEVDILTLTATPIPRTLNMSMNG
IRDLSIIATPPAKRLSVKTFVRESDDNLIKEAILREILRGGQVYFLHNEVKSIDRRAQEI
QALVPEARIGIGHGQMRERELESVMSDFYHKRFNILVSTTIIETGIDVPTANTIVIERAD
KFGLAQLHQLRGRVGRSHHQAYAYLMTPNKKAMTNDALKRLEAIAEAQDLGAGFTLASHD
LEIRGAGELLGDEQSGQMQAIGFSLYMDMLERAVKAIQEGKTIDLDQPEQQGVEINLRIP
ALIPDDYLPDVHTRLILYKRIASVKDEADLNELQVEMIDRFGLLPEPLKNLFRQTQIRFQ
AEQMGITKVEASRQGGRLEFASQTQVDPLTIVKLVQKMPQHFRLDGANHLKFSFDMETPE
ERLHQVTHVLTQLQQAS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgccacatttctaccagaaatccccacaaaacccaatgataaacgcagttgg
ggccaactgattggctcatctggagccgcactttcaattgtggaatcggcacagaacttt
tcaggcaactgcgtcgtagtggcgccggatatggctaccgcggaaatatttaaaagcgac
atcgaggtattgcaaaagggtcgcaacaacgggcgcaaagtttacctgtttaacgattgg
gaaacactcccctacgacagtttttctcctcatcaggacatcatttcagagcgaatgcgg
tgtctgtatcacctgcatgcgagcgacaattgcatcataattgttgcatcttcgacactc
ttgcagcgtttacccccgaccgactatattctaagccacagcctggtgttgaaagttaac
gatcagctcgaccgagaagaatttcgccatcatttaaccaattcaggatacaccagcgta
gacaccgtataccagcacggcgaatttgcggtgcgcggtgcattaattgatgtataccct
atgggaagccgcgcagcttatcgcatcgaactttttgatgacagcgtagactccctgcgg
gagttcgatccggagacccaacggacaatcacccaagttgaaagcatcgagctgttgccc
ggaaaggaatttcccttcgacaaggccggaatcaacgctttcaaaagccgttggtatgaa
accttcgacgtagaccacagcgcgtgccctgtgtttcaggacatcagctcaggattatcc
cccgccggggtcgagtattacttaccattgttttttgatgaaacggcgacgttattcgac
tacctagcggacgccccggaaaaaaccttgctctttgtgcatgagaaggttccgcaagcc
atcgaaaatcattggaaagatatagaaagccgctacttaagccgcaatggtgaccgcgaa
agacctattctccctactcaccgggcatttcatccagtcaacgcgctatacagcgcgatg
aaaccctatccaagagtcaccttatataatcaatcgatagtagaaggtaaaggaagcgac
aacttaatgctttctacgtccccggcgctgagtgtggacagtaaagcgaacaatccgcta
cacctccttgagtccttcctgaatcggaccgataagcgggtacttttctgcgcagagagc
tccggccgaaaggaaacgctaaaagaacagctaaaaaaaattggtgtacgtccggaagaa
tcgacttcggtcttcagcttccttgaaagccagcaaaaaatcgcgattaccgtagcgcaa
ctcgacaacaccgttaactgtcagcaacccggtttcattctgattgccgaacaacagctg
ttcggcaaccgcgtacagcaacgacgtcggcgcagtaagaacgcggaagaccccgacaac
atcattaagaatctcactgagcttaagctcgatgcacccgtagtgcacctggaccacggc
gtcggccgctataaaggcctacagacgatagaacacgatggccaggcagatgagttcctg
gttttggcatacgcagacgacaccaagctctatgtcccggttgccaacctgcatatgatc
agtcgttacagcggcgccgacccggcgctggcaccacttcaccggcttggcagcgaaacc
tggcaaaaagcgaagcgaaaagccgcagaacaaatacgcgacgtcgcagcagaattgctc
gagatttatgcaaagcggaaggcccggcaagggttcagttacgacaatcccaaggaggcc
tacgatcagttcgccgcagggttcccgtttgaagaaacgccagaccagcaatcagctatt
cgtgcagtccgcgacgacatgctctcagcgcaacccatggatcgcctggtctgtggcgac
gtcggtttcggaaaaacggaagttgcgatgcgcgctgcctttatcgctgtacaaaacagc
aaacaggttgcggttctggtacctacaacactgctggcacaacaacatttcgacaacttt
aaggacagattcgcagactggccggtaaatatcgaagtcgtctcccgctttcgcagtcaa
aaggagctcaccaacgtacagcagagactcgaacaaggcagcgtggacattctcattggc
acgcacaaattgatactaggggacttcaagtaccccaatctgggactggtaattatcgat
gaggagcatcgctttggcgtgcgacagaaggaagcactgaaggcgttgcggacagaggtc
gatattctcaccctaacagcaacaccaattccacgcacacttaacatgtcgatgaatggc
attcgtgacctttcgataatcgccacaccgcccgccaaacggctatcggtaaaaaccttc
gtgcgagagagcgacgacaaccttataaaagaagcgatactgcgagaaattttacgcggt
ggccaggtttactttctgcacaacgaggtaaaaagcatcgaccggcgtgcacaggagata
caggcgctggtgcccgaagcacgtatcggtatcggccatggtcaaatgcgcgagcgagag
ctggaaagtgtgatgtcagacttctatcacaagcgctttaatattttggtcagcactacg
attatcgagactgggattgatgtccctacagcgaacaccatcgtcattgagcgggctgac
aagttcggtctggcccaactccaccaattgcggggacgtgttgggcgctcccaccaccag
gcttacgcttatttgatgacccccaacaaaaaagccatgaccaatgacgccctcaagcgc
ctggaagccatcgcagaagcgcaagacctgggcgcggggtttactctcgcctcccacgac
ctggaaattcgcggtgcaggcgagttgctcggcgacgagcagagcgggcagatgcaggcc
atcggcttttcgctttacatggatatgctcgagcgggcggtgaaagcgattcaagaaggt
aaaaccatcgacctggatcaaccggaacagcaaggcgtcgaaattaatctgcgcatcccg
gcactgatcccagacgactacctacccgatgtccacactcgcctgatactatacaagcgt
atcgcctcagtaaaagatgaagccgacctcaatgaactccaggttgagatgatagatcgt
tttgggctgcttccggagcccttgaaaaacttgttccgtcaaacacagatacgcttccag
gcagaacaaatgggtatcaccaaggtcgaagccagcaggcagggcggccgccttgagttt
gccagccagactcaggtcgatccgcttacaattgttaagctggttcaaaaaatgccacaa
catttccgactcgacggcgcaaaccatttaaaattcagctttgacatggaaacccctgag
gagcgattgcaccaggtaacccatgtacttactcaactacaacaggccagttaa
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