Tepidimonas taiwanensis: LCC91_02250
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Entry
LCC91_02250 CDS
T07546
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ttw
Tepidimonas taiwanensis
Pathway
ttw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ttw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LCC91_02250 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttw03400
]
LCC91_02250 (sbcB)
Enzymes [BR:
ttw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LCC91_02250 (sbcB)
DNA repair and recombination proteins [BR:
ttw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LCC91_02250 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LCC91_02250 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LCC91_02250 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UBQ05963
LinkDB
All DBs
Position
484280..485773
Genome browser
AA seq
497 aa
AA seq
DB search
MNTEPHTFFWHDYETFGPDPRWDRPAQFAGRRTDAELHPIGEPVVWYCQPAPDYLPDPES
CLITGITPQRCREQGLPERVFAESILRELERPGTIGVGYNTIRFDDEFTRHLLWRNLLDP
YAREWRNGCGRWDLLDVVRMTWALRPDGIEWPRHPDGKPSFRLEHLSAANGLVHAQAHDA
LSDVDATLALARLIRQRQPRLFDYALGLRRRERVMAVLGLPALAGQARPFVHISGQFPAE
RGCLAVMWPLATHPNNRHELLAWDLAYDPRELVDLRPEEVRRRMFTREADLPPGVRRLPL
KSVHLNRSPMVVASLSILRDGAAQRFGLDLGQIERHAAHAAALPDLGALWAAVYERHSRE
EPTDVDAALYDGFIGDEDRRRLNRLRALPPDDPAWRHTGFDDPRLPELVFRFRARNHPET
LDAQEQVRWRAHCEERLLRGTGRGMSLCAYRERLGALAEEARERGDTRGQTILAALGDYA
AALVPTDANGPNSHGCK
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaccgagccccacaccttcttctggcatgactacgagacgttcggacccgatccg
cggtgggatcggccggcgcagttcgccggccgacgcaccgacgccgaactccaccccatc
ggcgagccggtggtgtggtactgccagccggcgccggactacctgccggaccccgagagc
tgtctgatcaccggcatcacgccgcagcgctgccgcgagcaggggctgcccgagcgggtg
tttgccgaatcgatcctgcgcgagctggagcggccggggacgatcggtgtcggctacaac
acgatccgcttcgacgacgagttcacccgccacctgctgtggcgcaacctgctcgatccg
tatgcacgggagtggcgcaacggctgcggtcgctgggacctgctggatgtggtgcgcatg
acctgggcgctgcgcccggacggcatcgagtggccccgccatccggacggcaagccgagt
tttcggctggaacacctgagcgcggccaacggcctcgtgcacgcccaggcgcacgacgca
ctgtcggacgtcgacgcgacgctggcgctggcgcggctgatccgccagcgccagccgcgt
ctgttcgactacgcgctgggactgcgtcggcgtgagcgcgtcatggcggtgttgggtctg
ccggcgctggcggggcaggcgcggccgttcgtgcacatctccggccagttcccggccgag
cgggggtgtctggccgtgatgtggccgctggcgacgcatccaaacaatcgccacgagctg
ttggcatgggatttggcatacgatccgcgcgagttggtcgacctgcgtcccgaagaggtc
aggcggcggatgtttacacgcgaagccgatttgccgccgggcgtgcggcgcctgccgctc
aagagtgtgcatttgaatcgctcaccgatggtggtggcgagtctgtcgatattgcgcgac
ggggcagcgcagcggttcgggctggatttggggcagatcgagcggcacgcagcccatgcc
gcagcgttgccggacttgggggcgctgtgggcagccgtttacgaacggcactcacgggaa
gagcccacggatgtcgatgcagcgctctacgacggatttatcggtgacgaggatcggcga
cggttgaaccgattgcgcgcgctgccacctgacgatccggcatggcgtcacactgggttt
gacgatccgcgtttacccgagttggtgtttcgtttccgcgcccgcaaccatcccgagacg
ttggatgcgcaagagcaagtgcgttggcgggcgcattgcgaagagcgtctgctgcgcggc
accgggcgcggcatgtcgctgtgcgcatatcgggagcgtcttggcgcattggccgaagag
gcgcgcgagcgcggcgacacacgggggcaaacgattctggcagcgctcggcgactatgcg
gcggcactcgttcccacggacgcgaacggaccaaacagccatggttgcaaatga
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