Tepidimonas taiwanensis: LCC91_02395
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Entry
LCC91_02395 CDS
T07546
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ttw
Tepidimonas taiwanensis
Pathway
ttw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCC91_02395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttw03019
]
LCC91_02395
Enzymes [BR:
ttw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LCC91_02395
Messenger RNA biogenesis [BR:
ttw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCC91_02395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UBQ05986
LinkDB
All DBs
Position
513960..515474
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AA seq
504 aa
AA seq
DB search
MAQTFSELNLAEPLLRAVAEMGYTTLTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFSLP
LLQRLLRHANTSTSPARHPVRALVLLPTRELADQVAQQIKLYAKYTPLRSAVVFGGMDMK
PQVEELRKGVEVLVATPGRLLDHIEAKSAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKQRTTLLFSATFSPEIKRLAASYLQDPVVIEVARANTTASTVEQRFFRVEEDDKRQAL
KQLVRDQQVKQAFVFVNSKLGCARLARALERDGFRVAALHGDKSQDERLKALDAFKQGQV
DLLVCTDVAARGLDIKDVPAVFNVDIPFNAEDYVHRIGRTGRAGASGLAISFVSGRDAKA
LAEIEKLIGRRAEVEPLEIEDERRPRVRGAEREDGARSRRVAEADANAAPAAEARAAARA
GEGRTARGRSGGRTAGAPADPLLDQPYEPALPPDAKAAWEQPSATPAPKGLSAYIRPKRK
VAALLRAPQPLSAPAAEPADTVSG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcacagactttttccgaattgaacctcgccgagccgctgctgcgggcggtggccgag
atggggtatacgacgctcacgccgatccaggcgcaggcgattccggtggtgctgcagggc
cgcgacgtgatgggcgcggcgcagacgggcaccggcaagacggcggcattctcactgccg
ctgctgcagcggctgttgcgtcacgccaacacctcgacctcgcccgcgcggcacccggtg
cgggcgttggtgctgctgccgacgcgcgaactcgccgatcaggtcgcgcagcagatcaag
ctgtacgcgaagtacacgccgctgcgcagcgcggtggtgttcggcggcatggacatgaag
ccgcaggtcgaggagctgcgcaagggggtcgaggtgctggtggccacgcccgggcggctg
ctcgaccacatcgaagccaagtccgccgtgctgaatcaggtcgagtacgtcgtgctcgac
gaggcggaccgcatgctcgacatcggctttttgccggacctgcagcgcatcctgtcgtac
ctgccgaagcagcgcacgacgctgctgttttccgcgacgttctcgccggagatcaagcgg
ctggcggccagctacctgcaagacccggtcgtcatcgaagtcgcgcgcgccaacaccacg
gcgtcgaccgtggagcagcgctttttccgcgtcgaggaagacgacaagcgtcaggcgctc
aagcagctcgtgcgcgaccagcaggtcaagcaggccttcgtcttcgtcaacagcaagctg
ggctgtgcgcggctggcgcgggcgctggagcgcgacggttttcgcgtcgcggcgctgcac
ggcgacaagagccaggacgagcggctcaaggcgctcgacgccttcaagcagggacaggtg
gacctgctggtgtgcaccgacgtcgcggcgcgcgggctcgacatcaaggacgtgccggcg
gtgttcaacgtggacatcccgttcaacgccgaggactacgtgcaccgcatcggccgcacg
gggcgcgccggcgcgtcggggctggcgatttcgttcgttagcggccgcgacgcgaaggcg
ctggccgagattgaaaaactcatcggccgccgcgcggaggtggagccgctggagatcgag
gacgaacggcggccgcgcgtccgcggcgcggagcgggaggacggcgcgcgttcacggcgt
gtcgccgaggcggatgctaacgccgcgccggccgccgaagcccgtgccgccgcacgggcg
ggcgaagggcgcaccgcccggggtcgcagcggggggcgaacggcgggcgcgccggccgat
ccgctgctcgatcagccgtacgagcccgcgctgccgcccgacgccaaggcggcgtgggag
cagcccagcgcgacgccggcgccgaaaggcctgtcggcctacatccgcccgaagcgcaag
gtggcggcgctgttgcgcgcgccccagccgctcagcgccccggccgctgagcctgcggac
acggtatccggatga
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