Tepidimonas taiwanensis: LCC91_04235
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Entry
LCC91_04235 CDS
T07546
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ttw
Tepidimonas taiwanensis
Pathway
ttw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCC91_04235 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttw03019
]
LCC91_04235 (rnr)
03016 Transfer RNA biogenesis [BR:
ttw03016
]
LCC91_04235 (rnr)
Enzymes [BR:
ttw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LCC91_04235 (rnr)
Messenger RNA biogenesis [BR:
ttw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LCC91_04235 (rnr)
Transfer RNA biogenesis [BR:
ttw03016
]
Prokaryotic type
tRNA degradation factors
LCC91_04235 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UBQ06310
LinkDB
All DBs
Position
916232..918457
Genome browser
AA seq
741 aa
AA seq
DB search
MKEKISATLAEVEGTVIGHRDGHGFVVRDDGQPDIYLSPNEMRAVLHKDRVRVRIIRHDR
RGRPEGRVTEILARSDTPIIGRLLHEGGVWLVAPEDKRYGQDVLIPKGATGSAQPGQVVV
VELTEPPALYGQPVGRVKEVLGDIDDPGMEIEIAVRKYGVPHQFSEAALAEARALPEKVR
AVDRRGRVDLTDVPLVTIDGEDARDFDDAVYCEPARVGAGRGWRLLVAIADVSHYVRNGA
ALDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLCMVCDMLIDAKGQVQAYQF
YPAVMHSHQRFTYTEVAAILQNTRGPLAQRHAALVPHLLNLYDVYQALLAAREARGAVDL
ETVETQIVCDEAGRIERIEPRTRNDAHRLIEEAMLAANVCAAEFIATHRHPALYRVHERP
SADKLETLREYLKALGVGVTIGDEPTPRDFQAISKATADRPDAPQIHQMLLRSMQQAMYS
PHNVGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILKGERYHLPVLPTPGEAQAKLAKR
LEERGASDAMKRTRGRPSNEILGWEAAGLHCSANERRADEASRDVEAWLKCKYMRERLGE
EFTGTVTAVTSFGLFVTLDALYVEGLVHITELGGEYFRYDERRQELRGERTGVRYTLGSK
VAVQVSRVDLDGRRIDFRLVTDPAQERGTERTAGDDERGESAPRRRTRPAGAGKKGGRPA
SGGVPSTSAGRSARRARPRRN
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagaaaaaatatccgctaccctggccgaggtcgaaggcaccgtgatcggccaccgc
gacgggcacggcttcgtcgtgcgcgacgacggtcaacccgacatttacctgtcgcccaac
gagatgcgcgcggtgctgcacaaagaccgcgtgcgcgtgcgcatcatccgccatgaccgc
cgcggccgcccggaggggcgggtcaccgagatcctagcgcgctccgacaccccgatcatc
ggccgcctgctgcacgagggcggggtgtggctcgtggcaccggaagacaagcgctacggc
caggacgtcctgatccccaagggtgcgaccggcagcgcgcagcccgggcaggtggtggtc
gtggaactgaccgagccaccggcgctgtacggacagcccgtcgggcgcgtgaaagaggtg
ctgggcgatatcgacgacccgggcatggagatcgaaatcgccgtgcgcaagtacggcgtg
ccgcaccagttttcggaagccgcgctggccgaggcgcgcgcgctgccggagaaagtccgc
gccgtcgaccgccgcggccgtgtcgacctgaccgacgtgccactggtgacgatcgatggc
gaggacgcgcgcgacttcgacgacgcggtgtactgcgagccggcccgcgtgggggccggg
cgggggtggcggctgctggtggcgatcgccgacgtcagccactacgtgcgcaacggcgcg
gcgctggacatcgacgcgtacgaccgcgccaccagcgtgtacttcccgcgccgcgtcatc
ccgatgctgccggagaagctctccaacggcttgtgttcgctcaacccgggggtggaccgg
ctgtgcatggtgtgcgacatgctgatcgacgccaaggggcaggtgcaggcgtaccagttc
tacccggcggtgatgcacagccaccagcgcttcacgtacacggaggtggcggcgatcctg
cagaacacgcgcggcccgctggcccagcggcacgccgcgctggtgccgcacctgctcaac
ctgtacgacgtgtaccaggcgctgctggcggcgcgggaggcgcgcggcgcagtggacctc
gagacggtggagacgcaaatcgtctgcgacgaggccgggcgcatcgagcgcatcgagccg
cgcacgcgcaacgatgcccaccggctgatcgaggaggcgatgctggcggccaacgtctgc
gccgccgagttcatcgccacccaccgccatccggcgctgtaccgcgtgcacgaacggccg
tcggcggacaagctcgagaccctgcgcgagtacctcaaggcgctgggcgtcggggtgacg
atcggcgacgagcccaccccgcgcgactttcaggcgatttccaaggcgaccgcggaccgc
ccggacgcgccgcagatccaccagatgctgctgcgttcgatgcagcaggcgatgtattcg
ccgcacaacgtggggcactttggcctcgcgttcgaggcctacacccacttcacgagcccg
atccgccgctacccggacctgctcgtgcaccgcgtcatcaaggcgatcctgaaaggcgag
cgctaccacctgccggtgttgccgacaccgggcgaggcgcaggccaagctggccaagcgg
ctggaggaacgcggcgcgtccgacgcaatgaagcgcacgcgcggtcggccgtcgaacgag
attctcgggtgggaggcggcaggcctgcactgcagcgccaacgagcgccgcgccgacgag
gccagccgcgacgtcgaggcgtggctcaagtgcaagtacatgcgcgagcgcctgggcgag
gagttcacgggcaccgtcaccgcggtcacgagcttcggcctgttcgtcacgctcgacgcc
ctgtacgtcgagggcctggtgcacatcaccgagctgggcggcgagtatttccgctacgac
gagcgccggcaggagctgcgcggcgagcgcaccggcgtgcgctataccctcggctccaag
gtggcggtgcaggtcagccgcgtcgatctggacggccgccgcatcgacttccgcctggtg
accgacccggcgcaggagcgcggcacggagcggaccgcgggcgatgacgagcgcggcgaa
tccgcgccccggcggcgcacccgccccgccggggcgggcaaaaagggcggccgtccggcg
tcgggtggggtaccatcgacatctgccgggcgttcggcccggcgcgcgcggccccggcgc
aactga
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