Tepidimonas taiwanensis: LCC91_09890
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Entry
LCC91_09890 CDS
T07546
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ttw
Tepidimonas taiwanensis
Pathway
ttw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCC91_09890 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttw03019
]
LCC91_09890 (pcnB)
Enzymes [BR:
ttw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LCC91_09890 (pcnB)
Messenger RNA biogenesis [BR:
ttw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LCC91_09890 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
UBQ04868
LinkDB
All DBs
Position
complement(2089557..2091185)
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AA seq
542 aa
AA seq
DB search
MIKQLIDKLLDKTVRPTLRRPRFGKREDVPVSVHGIDPSLVDGRALDVVHTLKRAGYEAY
IVGGAVRDLLLGLRPKDFDVATNATPEQVKALFRRAFIIGRRFRIVHVVFGRGREHEVIE
VSTFRAYVDPSQAEPVVGDERSTRALAGVSLAVDASGRVLRDNVWGPIEQDAARRDFTIN
AMYYDPETQTVVDFHQGIRDARKRVLRMIGDPATRYREDPVRIIRAVRFEAKLSRLGFKL
DAKTRAPMAAHLPLLADVPPSRLFDEMLKLLQTGHALASIEALRANGLARGIYPLLDVVV
ERADEPFVRAALQDTDRRVAEGKPVAPSFLLACVLWQDVRAAWQRRLADGVPVFPALSEA
VDEVFDARIGDVSGRGKLGADMREIWMMQPRFDKRTGNGPFTLVEQPRFRAGFDFLRLRA
QVGEVDEELSHWWETFSQAGEAVRRDMVEAVRLEQQRAKAPGKASRGRCRRDDGPDAGGT
NGANGVTAEVAVTPPSPTPAVSPSADGDAQAPTAPRKRRRRRRKPAGGAAGDAATGDGAP
DA
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaacaactgatcgacaaactgttggacaagacggtgcggcccacgctgcgccgg
ccgcgctttggcaaacgcgaggacgtaccggtgtcggtgcacgggatcgacccgtcgctg
gtcgacggccgggcgctggacgtggtgcacacgctcaagcgcgccggctacgaggcgtac
atcgtcggcggcgcggtgcgcgacctgctgctgggcctgcggcccaaggatttcgacgtc
gccaccaacgccacgcccgagcaggtcaaggcgctgttccggcgcgcgttcatcatcggg
cggcgctttcgcatcgtgcacgtggtgttcgggcgcgggcgcgagcacgaggtgatcgag
gtctcgaccttccgcgcctacgtcgacccgagccaggccgagccggtcgtcggtgacgag
cgctccacccgggcgctggccggggtgtcgctcgcggtggacgccagtggccgcgtgctg
cgcgacaacgtctgggggccgatcgagcaggacgctgcgcggcgcgacttcacgatcaac
gcgatgtactacgaccccgagacgcagacggtggtcgatttccaccagggcatccgcgac
gcgcgcaagcgtgtactgcgcatgatcggcgacccggcgacgcgctaccgcgaggacccg
gtgcgcatcatccgcgcggtgcgcttcgaggccaagctgagccgcctcggattcaagctc
gacgccaagacgcgcgcgccgatggcggcacacctgccgctgctggccgatgtgccgccg
agccgcctgttcgacgagatgctcaagctgctgcagaccgggcacgcgctggccagtatc
gaggcgctgcgcgccaacgggctggcgcgtggcatctacccgctgctggacgtggtggtc
gagcgcgcggacgagccgttcgtgcgcgcggcgctgcaggacacggaccgccgcgtggct
gaaggcaagccggtggcgcccagctttttgctcgcgtgcgtgctgtggcaggacgtgcgc
gccgcgtggcagcgccggctcgcggacggcgtgccggtattcccggcgctgtccgaggcg
gtggacgaggtgttcgacgcgcgcatcggcgatgtctcggggcgtggcaagctcggtgcc
gacatgcgcgagatctggatgatgcagccgcgcttcgacaagcgcaccggcaacgggccg
ttcacgctggtggagcagccgcgctttcgcgcgggcttcgacttcctgcgcctgcgcgcg
caggtgggcgaggtggacgaggagctctcccactggtgggaaacgttcagccaggccggc
gaggccgtgcggcgcgacatggtggaggcggtgcggctggagcagcagcgcgccaaggcc
ccgggcaaggcgtcgcgtggtcggtgccgccgcgatgatgggcccgacgccggggggacg
aacggtgcgaatggcgtcacagccgaagttgcagtgacgccgccgtcgccgacgccggcg
gtgtcaccgtcggccgacggtgacgcccaggcccccaccgcgccgcgcaagcgccggcgg
cggcgccgcaagcccgcgggcggggcggcgggcgacgccgctacgggagatggggccccc
gatgcgtga
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