Tepidimonas taiwanensis: LCC91_13320
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Entry
LCC91_13320 CDS
T07546
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ttw
Tepidimonas taiwanensis
Pathway
ttw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ttw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCC91_13320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttw03021
]
LCC91_13320 (rpoC)
03400 DNA repair and recombination proteins [BR:
ttw03400
]
LCC91_13320 (rpoC)
Enzymes [BR:
ttw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCC91_13320 (rpoC)
Transcription machinery [BR:
ttw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCC91_13320 (rpoC)
DNA repair and recombination proteins [BR:
ttw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCC91_13320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UBQ05473
LinkDB
All DBs
Position
2819360..2823550
Genome browser
AA seq
1396 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFSIMSEDDYDAKRREYGDEFVAKM
GAEGIKELLQSIDLDTEIERLRNDLTGSEMKVKKNAKRLKVLEAFKKSGIKPEWMILEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFARLEQMGIATTIKAAKKEVEAGTPVVWDILEDVIKEHPVL
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARV
LMLSSNNVLFPANGEPSIVPSQDVVLGLYYATRERVNGKGEGMVFADVDEVERALANGVV
ELTSRVSVRLTEWLKNKETGELEAVTKLRDTTVGRALLSRILPKGLPFELIDKPLKKKEI
SKLINASFRKCGLKETVVFADKLLQNGFRLATQAGISICIDDMLVPAEKPAIIERAEAEV
KEIAQQYASGLVTAGERYNKVVDIWGKAGDEISKVMMEHLKKEKVVDRHGNVVEQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEEDCGTANGTLMRAIVEGGEVIESLRERILG
RTTAEDIVDPETQRVLVKAGEMLDEDAVDLIEQAGIDEVRVRTVLTCDTRYGVCAKCYGR
DLGRGGLVNVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGIVGFN
STMRYVTNAKGELVVISRSGEVVIHDDNGRERERHKVPYGATLAVRADQRITAGTILANW
DPLTRPIITEFAGVVKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGATKVVRPQVKLI
DAEGKEVKIPGTDHAVTVTFPVGALIQVRDGQTIHPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGILAEITGTVSFGKETKGKVRLQITDPDGKVWEELVPKEKSILVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVEVENPGDSHYIAGEQVERSEILNTNDALRAEGKTPATYRNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHEARRAKERLDEEERRA
IAEADALSADADAAAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccttgctcgacctgttcaagcagttcacgcccgacgagcacttcgacgccatc
aagatcggtctggcctccccggagaaaatccggtcgtggtcgttcggcgaggtgaagaag
cccgagaccatcaactaccgcacgttcaagccggagcgcgacgggctgttttgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggggtgatctgcgagaagtgcggcgtcgaggtgacccagaccaaggtgcgccgcgag
cgcatgggccacatcgagctggccgcgccgtgcgcgcacatctggttcctgaagtcgctg
cccagccgcctgggtctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaggcctatgtggtggtggacccgggcatgaccccgctgaaaaagttcagcatcatg
tccgaggacgactacgacgccaagcgccgcgagtacggtgacgagttcgtcgccaagatg
ggcgccgagggcatcaaggagctgctgcagagcatcgacctcgacaccgagatcgagcgg
ctgcgcaacgacctgaccggctcggagatgaaggtcaagaagaacgccaagcgcctgaag
gtgctggaggcgttcaagaagtccggcatcaagcccgagtggatgatcctggaggtgctg
ccggtgctgccgccggacctgcggccgctggtgccgctcgatggcgggcgcttcgcgacg
tcggacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgaagcgcctg
ctggagctcaaggcccccgagatcatcgcgcgcaacgaaaagcgcatgctgcaggaggcg
gtggacagcctgctggacaacggccgccgcggcaaggcgatgaccggcgccaacaagcgc
gcgctgaagtcgctcgccgacatgatcaagggcaagagcgggcgcttccgccagaacctg
ctgggcaagcgcgtggactactcgggccgctcggtcatcgtggtgggtccgacgctcaag
ctgcaccagtgcggtctgcccaaactgatggcgctggagctgttcaagccgttcatcttc
gcgcggctggagcagatgggcatcgccaccaccatcaaggcggccaagaaggaagtcgag
gccggcacgccggtggtgtgggacatcctggaagacgtcatcaaggagcacccggtgctg
ctcaaccgggcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtgctgatc
gagggcaaggcgatccagctgcacccgctggtgtgcgcggcgttcaacgccgacttcgac
ggcgaccagatggccgtgcacgtgccgctgtcgctggaagcgcagatggaagcgcgcgtg
ctgatgctgtcgtcgaacaacgtgctcttcccggccaacggcgaaccgtccatcgtgccg
tcgcaggacgtggtgttgggcctgtactacgccacgcgcgagcgcgtcaacggcaagggc
gagggcatggtcttcgccgacgtcgatgaggtcgagcgcgcgctggccaacggtgtggtc
gagctcaccagccgcgtcagcgtccgcctgaccgagtggctgaagaacaaggaaaccggc
gagctggaggcggtgacgaagctgcgcgacacgacggtcggccgcgcgctgctgtcgcgc
atcctgcccaagggtctgccgttcgagctgatcgacaagccgctgaagaagaaggagatc
tccaagctcatcaacgcctccttccgcaagtgcggcctgaaggagacggtggtcttcgcc
gacaagctgctgcaaaacggcttccgcctggccacccaggccggcatctcgatctgcatc
gacgacatgctggtgccggcggaaaaacccgccatcatcgagcgcgccgaggccgaggtc
aaggaaatcgcgcagcagtacgcgtcgggtctggtgaccgcgggcgagcgctacaacaag
gtggtcgacatctggggcaaggccggtgacgagatctccaaggtgatgatggagcacctg
aagaaggagaaggtcgtcgaccgccacggcaacgtggtcgagcaggagtcgttcaactcc
atctacatgatggccgactcgggcgcgcgcggttccgctgcccagatccgccagctcgcc
ggcatgcgcggcctgatggccaagcccgacggctcgatcatcgaaacgcccatcaccgcg
aacttccgcgaggggctcaacgtcctgcagtacttcatctcgacccacggcgcgcgcaag
ggcctggccgacacggcgctcaagaccgcgaactcgggttacctcacgcgccgtctggtg
gacgtgacgcaggacctggtcgtcaccgaggaggattgcggcaccgccaacggcacgctg
atgcgcgcgatcgtcgagggcggcgaggtcatcgagagcctgcgcgagcgcatcctgggc
cgcacgacggccgaagacatcgtcgaccccgagacgcagcgcgtgctggtcaaggcgggt
gagatgctggacgaggatgcggtcgacctgatcgaacaggccggcatcgacgaggtgcgc
gtgcgcaccgtgctgacctgcgacacgcgctatggcgtgtgcgccaagtgctacgggcgc
gacctgggccgcggcgggctggtcaacgtcggcgaggcgattggtgtgatcgcggcgcag
tcgatcggtgagcccggcacgcagctgacgatgcgcaccttccacatcggtggcgcggcg
tcgcgcgcggcggtggcctccagcgtcgaggccaagtccaacggcatcgtcggcttcaac
agcacgatgcgctacgtcaccaacgccaagggcgagctggtggtcatctcccgctcgggc
gaggtcgtcatccacgacgacaacggccgcgagcgcgagcgccacaaggtgccgtacggc
gcgacgctggcggtgcgcgccgaccagcgcatcacggcaggcacgatcctggccaactgg
gacccgctgacgcgcccgatcatcaccgagttcgccggtgtggtgaagttcgaaaacgtc
gaggaaggcctgaccgtggccaagcaggtcgacgaggtcaccggcctgtcgacgctggtg
gtcatcgacccgaagcgccgcggcgcgaccaaggtcgtgcgtccgcaggtcaagctcatc
gacgccgagggcaaggaggtcaagatcccgggcaccgaccacgcggtgaccgtgaccttc
ccggtgggcgcgctgatccaggtgcgcgacggccagaccatccaccccggcgaggtgctg
gcgcgcatcccggtcgagggccagaagacccgcgacatcaccggcggtctgccgcgcgtg
gccgagctgttcgaggcccgctcgcccaaggacaagggaatcctggccgaaatcaccggc
acggtctccttcggcaaggaaaccaaaggcaaggtgcgcctgcagatcaccgacccggac
ggcaaggtgtgggaagagctcgtgccgaaggaaaagagcatcctcgtgcacgaagggcag
gtcgtcaacaagggcgaactcatcgtcgacggcccggccgacccgcaggacatcctgcgc
ctgctgggcatcgaggagctcgcgcgctacatcgtcgatgaggtgcaggacgtctaccgc
ctgcagggtgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccagatgttgcgc
cgcgtcgaggtggaaaaccccggcgacagccactacatcgcgggcgagcaggtcgagcgc
tccgagatcctcaacaccaacgacgcgctgcgcgccgagggcaagacgccggcgacgtac
cgcaacctgctgctgggcatcacgaaggcgtcgctgtcgaccgactcgttcatctccgcc
gcgtcgttccaggagacgacgcgcgtgctgaccgaggcggcgatcatgggcaagcgcgac
gagctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgatcccggcgggcaccggc
atggcgttccacgaggcgcgccgcgcgaaggagcgcctggatgaagaggagcgccgcgcg
atcgcggaggccgacgcgctgtcggccgacgccgacgcggccgccgagtaa
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integrated database retrieval system
