Thunnus thynnus (Atlantic bluefin tuna): 137168099
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Entry
137168099 CDS
T11154
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tty
Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137168099 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tty03041
]
137168099 (ddx42)
Enzymes [BR:
tty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137168099 (ddx42)
Spliceosome [BR:
tty03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
137168099 (ddx42)
Complex B
137168099 (ddx42)
Complex C
U2 SnRNP specific factors
137168099 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
137168099
NCBI-ProteinID:
XP_067426664
LinkDB
All DBs
Position
17:complement(6471902..6481221)
Genome browser
AA seq
908 aa
AA seq
DB search
MNWNKGGPGIKRGFGFGGFSLAGKKEEPQLTQKSHTSFGPPGSSGGYGKNQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
ENQAAKDMKKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEDEENIDY
DSDGNPIAPTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEELSNLTGTQVLELRQKLNLR
VSGAAPPKPCTSFAHFNFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIIDQKELEAGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEMLHSGS
DKWGWLTRRLVEFTSSGSVLIFVTKKANSEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TNKDTSFAGDLVRNLEGANQGVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRE
RPGLGAESSERSSSSSSILSSTSSYEGYSKPTTGAMGDRMSAMKQAFQAQYKSHFVAASS
GPPKLSTKSSSSSGWTSAGSLSSVPTESANGSERSSVAAMTLSGFTSAGSLSSVPTIQTS
SQQSFTPAAPPPLRDSSRDRHGEDWGRHGDSHHRHSDRSDRHSGESRHGDRDRHGDRDRD
RYGDRDRYSSSSSSSSRHSDSRNGDGSSRRDREDRRSERDGGDGRGDRGDDSFAVPEPPK
RRKSRWDN
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccaggtattaagcgaggctttgggtttggaggattttcc
cttgcggggaaaaaagaggaacctcaacttactcaaaagtctcacacatcattcgggccc
ccagggtccagtgggggatatgggaagaaccagcagcttccatccttctacaaaataggg
acaaaaagagccaattttgatgaagaaaatgcgtattttgaagatgatgaagaggagtcc
agcagcaatgtggatctgccgtacatcccagctgagaactcgcccacacggcagcagatg
cagtctggtggcggctcagacagtgaggatgatccactggatgcctttatggcagaagtt
gagaaccaagcagctaaggacatgaagaaactagaggaaaaggaaaaggagaaaaagtca
gccaagggtattcgtgatgacattgaagaagaggatgaacaagaagcctacttccgctac
atggcagagaaccccacagccgggctgacacaagaggaagatgaagagaacattgactat
gacagtgatggaaacccaattgccccgaccactaagaaaatcatcctgccccttcctcct
attgaccactctgagattgattacccgccgtttgagaaaaacttctacaatgagcacgag
gagctcagcaacctgactggaactcaagtgttggagttgaggcagaaactgaacttgcgg
gtgtctggtgctgcccctcctaaaccttgtactagctttgcccacttcaattttgatgag
cagctaatgcaccagatccgcaagtctgagtacactcagcccactccaattcagtgccag
ggtgtgcccatagctctgtctggacgtgacatgattggtatcgcaaaaactggcagcggt
aaaactgcagcttttatctggcccatgctggttcacatcatagaccagaaggagctggag
gcaggggaggggcccatcgcagtaatcgtgtgccccaccagagagctttgtcagcagatc
catgcagaatgtaagcgctttgggaaagcgtactcgctgcgttctgtggcggtttatgga
ggaggcagcatgtgggagcaggcaaaggctctgcaggagggagcagagatcgtggtgtgc
actccgggtcgtctgattgaccacgttaaaaagaaggccacatccctgcagagagtgaca
tacctggtgtttgatgaggctgatcgcatgtttgatatgggcttcgaatatcaggttaga
tctattgccagccacgtccgccccgacagacagacccttctgttcagcgccacctttcga
aagaagatagagaggctagccagagacatcttggtagatcctattcgtgtggtgcaggga
gacatcggagaggccaatgaggatgtgacccaggtggtggagatgctgcacagcgggtct
gataaatggggctggttgacccggcggctggtggagttcacctcctccggatcagtcctc
atcttcgtcaccaagaaggccaactctgaggagctggctactaacctgacgcaggagggc
tacagcctgggcctcctgcacggagacatggaccagagtgagaggaacaaggtcatcagt
gacttcaagaagaagaatttgcccattttggtggccactgatgtagccgctcgtggtctg
gacatcccgtccattcgcacggtggtaaactacgacgtggcgcgagacatcgacacacac
acgcacagaatcgggcgaaccgggcgtgccggagagaaaggtgtggcttacacccttctc
accaacaaagacacctcgttcgctggtgacctcgtgaggaatctggagggagccaatcaa
ggcgtttccaaagaactgatggatttagccatgcagaatccctggttcaggaaatccaga
tttaaaggtggtaaaggaaagaagctgaatatcggtggaggtggacttggttacagagag
agaccaggtttaggggctgaaagctctgaacgcagcagcagcagcagcagcattttgtct
tccactagtagctacgaaggctacagcaaaccaaccactggggcgatgggagaccgcatg
tcagcgatgaaacaagccttccaggctcagtataagagtcactttgtggctgcatccagt
ggtcctccaaagctcagcaccaagtctagcagctcttcaggctggaccagtgccggcagc
ctgagttctgtgccgacagagtccgccaatggctccgagcggtccagtgttgccgccatg
accctttcgggcttcaccagcgctggctccctaagctcagtgcccaccattcagaccagt
tcacagcaaagcttcactccagccgcacctcctccactaagagatagctcacgggacaga
cacggggaggactgggggcgccacggagacagtcaccaccgccacagcgacaggagcgat
cggcacagcggcgagagtcgccacggggaccgggatcgccatggagacagagaccgcgac
cgctacggggaccgggatcgctacagcagcagcagcagcagcagcagccgccacagcgac
agtcgtaacggagacgggagcagcaggagggacagagaggatcggaggagcgagagggat
gggggagatgggaggggggacagaggagatgatagctttgctgttcccgaaccaccaaaa
cgtagaaagagcaggtgggacaactag
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