Thunnus thynnus (Atlantic bluefin tuna): 137168939
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Entry
137168939 CDS
T11154
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03008
Ribosome biogenesis in eukaryotes
tty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
137168939 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
137168939 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tty03021
]
137168939 (xrn2)
03019 Messenger RNA biogenesis [BR:
tty03019
]
137168939 (xrn2)
03009 Ribosome biogenesis [BR:
tty03009
]
137168939 (xrn2)
03016 Transfer RNA biogenesis [BR:
tty03016
]
137168939 (xrn2)
Transcription machinery [BR:
tty03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137168939 (xrn2)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
137168939 (xrn2)
Ribosome biogenesis [BR:
tty03009
]
Eukaryotic type
Pre-60S particles
RNases
137168939 (xrn2)
Transfer RNA biogenesis [BR:
tty03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
137168939 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Bac_globin
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
137168939
NCBI-ProteinID:
XP_067427921
LinkDB
All DBs
Position
18:complement(5294922..5341405)
Genome browser
AA seq
967 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELAEEKHRMREEIIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAHCLRYYVAD
RLSNDPGWRNVTVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQMGHEIKDCQGTAREKQGEHDEFADTMPVSEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTENGFVELERVEMIMQAVGVAEDNIFKKRKEDDESFKRRMKE
KRKRMKAEQQGPAYLTTGQFAPHALGRRGGPEPVQNARHQAFDMRMQHNKDAAQSLKATM
RNGGNSSAGPSEGTDSRGVKRKAEDSDDEPEPEDNVRLWEDGWKQRYYKTKFDVDVTDED
FRRKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTEFEKGTQPFK
PLEQLMGVFPAASGNFLPQTWRNLMSSPDSSIIDFYPDDFAIDLNGKKYAWQGVALLPFV
DERRLRAALADVYADLTPEEVKRNSLGSDVMFLGKSHPLSDFIHELYRAESREGTEIPAE
LCHGIQGTLNLDDDPILPDKAVKSPIPMLRDISQNSAIGVQFKDPQYAQDFVFKAVLLAG
AKMPNKVLKPGDWERGNREPWRPQLGFNPNRQQAHLDQSGFRALGHNLNRNQRGGGQYSN
TPPPGNYNQGNYRPSHSGGHQPFQHSRQNSLLGAPPSFHQPQYPRQQQYSRGGGHGWDRA
MQSQQSSYQHNMSRGRGGAGPGSYQQRYDQRRDDWHERRDDRGQQHQGYNSGRGYPPPPP
SRRYNWN
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgttggctcagccgaaaatatccgtcaatcattgtgcac
tgtgtcgaggagaaggggaaagaatgtaacggagtccgtatacctgtcgacacaaccaaa
ccaaaccccaacgaggtggagttcgacaacctgtacctggacatgaacgggatcattcac
ccttgtacacatccagaagacaaaccagctcccaaaaatgaagacgagatgatggtcgcc
attttcgaatacatcgaccgtctgtttaatatagtgcggcccaggagggttctctacatg
gccattgatggagtggctcctcgtgccaaaatgaaccagcagcgctctcggcggtttcga
gcctccaaagaaggagtggagctggcggaggagaagcatcgcatgagggaggagatcatc
cagagaggaggttatcttccacccgaggagattaaagagaggtttgacagcaactgtatc
actccaggaacagagttcatggacaacctggcacattgtcttcgatattacgttgcagac
agactcagcaatgatccgggatggaggaacgtcacggtgttcttgtctgatgccagtgtt
ccaggtgaaggagaacacaagattatggacttcatcaggagacagagagctcagcccaac
cacgaccccaacacacaccactgcctgtgtggagccgacgctgacctgatcatgctggga
ctggccacccacgagccaaacttcaccatcatcagagaggagtttaaacccaacaaacct
cgaccgtgcgcgctctgcggacagatgggtcacgaaatcaaagactgtcaggggacggcc
agagagaagcagggagagcacgatgaattcgctgacacgatgccggtttctgagcaggag
ttcatattcatcaggctctgtgtgctgcgggagtacctggccagagagctgacgatggcc
agcctcccgtttccctttgactttgagaggagcgtcgacgactgggtcttcatgtgcttc
tttgtcggaaatgacttcctgccacacctgccgtccttagaaatcagagagggagcgata
gatcgactggtcaacatctacaaagacgttgtgcacaaaaccggaggttacctgacagag
aacggattcgtcgagctggagcgagtagagatgatcatgcaggcggtgggcgtcgccgag
gacaacatcttcaaaaaacgcaaagaagatgatgaaagcttcaagagaagaatgaaagag
aaacggaagaggatgaaggcggagcagcaaggcccggcctacctcaccacgggccagttc
gcccctcacgccctggggagacgaggcggccccgagcccgtccagaacgcccggcaccag
gccttcgacatgaggatgcaacacaacaaggatgctgctcagtccctgaaggccacgatg
agaaatggaggcaattcgtctgcaggtcccagtgaaggcacagacagcaggggggtgaag
aggaaagccgaggacagtgacgacgagccggagcctgaagacaacgtcaggttgtgggag
gacggctggaagcagagatactacaagaccaagtttgacgtggacgtgacggacgaggat
ttcaggcggaaggtggttcagtcatacgtggagggtctctgctgggtgctgcgctactat
taccagggctgtgcctcctggaagtggtacttcccgtttcactacgccccgttcgcctct
gacttcaaagacatcaaaggcatgttcacagagtttgagaagggaacccaaccgttcaag
cccctggaacagctgatgggagtgtttcctgctgctagcggcaacttcctgccccagaca
tggcgaaacctcatgagcagtccggattcttccatcattgacttctacccggacgacttt
gccattgatctgaacggcaagaaatacgcctggcaaggcgtggccttgttgccgtttgtg
gacgaacgtcggctgagggcggctctggctgacgtttacgcggacctcacacctgaggaa
gtgaaaagaaacagtcttggaagcgacgtcatgtttctcgggaagtctcacccgctgtcc
gacttcatccatgaactataccgtgcagaatctcgtgagggcactgagatccctgcagag
ctctgccacggaatccaaggtacattaaatcttgatgacgaccctattctaccagataag
gcggtgaagtcgcctattccgatgctgcgtgacatttcacagaacagtgcgatcggagtg
cagttcaaggatcctcagtatgcacaagattttgtgttcaaggcggtcctcctcgctgga
gccaagatgcccaataaagtcctgaaacctggggactgggagagggggaacagggaacca
tggagacctcagctaggcttcaacccaaacagacagcaggctcacctggaccagtccggc
ttcagggctctgggtcacaatctgaacaggaaccaacgtggcggaggtcagtacagcaac
accccgccgccaggcaactacaaccaaggaaactaccgtccttcacacagcggcggccac
cagcccttccaacattccaggcagaacagtttgctgggagcgcctccttccttccaccag
ccccaatatccaaggcagcaacagtacagcagaggcgggggtcacggctgggatcgggcc
atgcagtcgcagcagtcgtcgtatcagcacaacatgagccgcggacggggaggggcgggg
ccaggcagctaccagcagcgctacgaccagcgtagagacgactggcacgagcgcagggac
gaccggggacaacaacaccagggctacaactcgggcagaggttaccctcctcctcctccc
tccagaagatataactggaactaa
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