Thunnus thynnus (Atlantic bluefin tuna): 137168959
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Entry
137168959 CDS
T11154
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137168959 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137168959 (cpsf2)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
137168959 (cpsf2)
U7-dependent histone pre-mRNA processing factors
137168959 (cpsf2)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
137168959
NCBI-ProteinID:
XP_067427957
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Position
18:complement(21523785..21532755)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKMGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDTKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELEEYLENDKIKKEAAKKLEQAKEVDVDSS
DESDMDDDLDQPATVKTKHHDLMMKGEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSVVPTKCISSVENLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKEEAEDGE
LAMDIAPDLGIDHSTTAAAAQRAIKNLFGEDDKELSEESDVIPTLEPLPPHEIPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagctgacagctgtgtcgggggtccaggaggagtctgccctctgt
tacctgctgcaggtggatgaattccgcttcctcctggactgtggctgggatgagaacttc
tcaatggacattattgatgctatgaaacgatatgttcatcaggttgatgctgtgcttctc
tcccatcctgaccccatacacctgggagccctgccatacgctgtggggaaaatgggctta
aactgcactatatatgccacaatacctgtctacaagatggggcaaatgttcatgtatgat
ctatatcagtctcgaaacaacagtgaagatttcacactcttcacccttgatgatgtggat
tgtgcatttgacaaaatccagcaactgaaatactctcagattgtcaatctgaaagggaaa
gggcatggtctttcaatcacaccgctccccgctggtcacatgattggagggactatttgg
aaaatcgtgaaggacggggaggaggagatcgtttatgctgtggacttcaaccacaagaga
gagatccacttgaacggctgcacgttggagagcatcagtcgtccttccttacttattaca
gactccttcaatgctacatatgtacaaccacgtcgcaaacaaagggatgagcagctcctt
accaatgtaatggagacccttcgtggtgacggtaatgtccttattgccgtggatacggct
gggcgcgtgttggagctggctcagctcctggaccagatttggaggacaaaggatgctgga
ctgggagcttacccactcgccctgcttaacaacgtcagctacaatgtggtggagttctcc
aagtcccaggtggagtggatgagtgacaagctcatgaggtgttttgaggacaagagaaac
aaccctttccagttccgtcacttgaccctgtgccacagtctggcagacctggcccgggtg
cccagccccaaggtggtgctgtgcagccagccagacctggaatctggcttttctagagaa
ctctttatccagtggtgccaagacaccaaaaactccatcatcctgacctaccgtactaca
cctggaaccctggcccgctacctcatcgacaaccccggagagaagatgctggatctggag
gtgaggaagagagtgaagctggaaggcaaggagctggaagaataccttgaaaatgataaa
ataaagaaggaagcggctaaaaaactcgaacaagcaaaagaggtggatgtggactccagt
gacgagagcgatatggacgatgacctggatcaaccagctactgtgaaaaccaaacaccac
gacttgatgatgaagggcgaggggagccgtaaaggcagtttcttcaaacaagccaaaaag
tcttacccaatgttccccacacacgaggagagaatcaaatgggacgagtacggagaaatc
atcaggctagaagactttcttgttcccgaactgcaagccacagaggaggagaaaagcaaa
ttggagtctgggttgaccaacggtgatgagcccatggaccaggacctctctgtcgtcccc
accaaatgcatctccagtgtagaaaatcttgaaatcagagccagagtaacatatatagac
tatgaaggtcgctctgacggcgactccataaagaagattattaatcagatgaagcccaga
cagctggtgatcgttcatgggccgccagaagccagcctggacctggctgagtcctgcaag
gctttcagcaaggacatcaaagtctacacacccaaactgcaggaaactatagacgccacc
agtgagacacacatctaccaggtacggttgaaagactccttggtgagctccctgcagttc
tgcaaggccaaagacacggagctggcgtggatcgacggcgtgctggacatgcgcgtggtg
aaggtggacacgggcgtgatgctggaggagggtgtgaaagaggaagcggaggacggcgag
ctggccatggacatcgcccccgatcttggcatagaccacagcaccacggcggcggcggcc
cagcgggccattaagaacctgttcggagaggatgacaaggagctgtctgaggagagtgat
gtcatccccacgctggagccactgcctccacatgagattccagggcatcagtcggtgttc
atcaacgagcctcgcctgtctgacttcaagcaggtcctgctgagagagggcatccaggcc
gagtttgtgggaggagtgctggtatgcaacaacatggtggccgtccgcaggacggaggcc
ggacgcattggcctggaaggctgcctgtgtgacgactactataagatccgggagcttctg
tatcagcagtacgccgtagtataa
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