Thunnus thynnus (Atlantic bluefin tuna): 137169771
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Entry
137169771 CDS
T11154
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137169771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tty03021
]
137169771
03019 Messenger RNA biogenesis [BR:
tty03019
]
137169771
Transcription machinery [BR:
tty03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137169771
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
137169771
U7-dependent histone pre-mRNA processing factors
137169771
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
ColD_2nd_Ig
Motif
Other DBs
NCBI-GeneID:
137169771
NCBI-ProteinID:
XP_067429216
LinkDB
All DBs
Position
18:5939897..5950656
Genome browser
AA seq
686 aa
AA seq
DB search
MAAKRKCDSTVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMTEPDEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVDIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCVQGQRVSGILVKRNFNYHILTPGDLSNYTDLCMSTVTQSQAIPYSGPISLLVSQLRSL
AGDVEQVDGAEKITIKIFKSITLVHEAGMVLLEWIANPLNDMYADAVATVVLEVQSNPNA
QKFLEGKRETFDMDVFVERLVLMLHDMFGDDCVNFKDGKNMSVTVDGVTASVDPETRSVT
CAEDETLREMVEVAVHRLYDALSPTF
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaaacgtaaatgtgacagcacggttcctgcggaggaaagcgaccagctgctc
atccgcccgctaggagcgggacaggaggttggacgatcctgcatcatcttggagttcaag
ggacgaaaaatcatgctggactgtgggatccatcctggtctggagggaatggacgctctg
ccgtacatcgacctgatcgatccggctgagatcgatctgctgctcatcagccacttccac
ctggaccactgtggagctctgccctggttcctgcagaagaccagctttaaaggacgcacc
ttcatgacgcacgccaccaaggccatctaccgctggctgctgtctgactacgtcaaagtc
agtaacatctcagcggacgacatgctgtacacagagaccgacctggaggagagcatggag
aagatcgagaccatcaacttccacgaggtgaaggaagtagctggcatcaagttctggtgt
taccacgccggccacgtcctgggagccgccatgttcatgatcgaaatcgctggcgtcaag
ttgttgtacacaggagatttctcccgtcaggaggaccgacatctgatggcagcagagatt
cccagtgttaaaccggacatcctcatcaccgagtcgacctacgggactcacatccatgag
aagcgggaggagagggaggctcgtttctgcaacaccgtccacgacatcgtgaacagggag
ggtcgctgtctgatccccgtcttcgctctgggacgagctcaggagctgctgctcatcctg
gacgagtactggcagaaccacccggagctccacgacatcccgatctactacgcctcgtct
ctggccaggaagtgcatggcggtctaccagacctacatcaacgccatgaacgacaagatc
cgcaaagccatcaacatcaacaaccccttcgtcttcaaacacatcagcaacctgaagagc
atggatcactttgacgacatcggtcccagtgtggtgatggcgtctcctggtatgatgcag
agcggtttgtccagagagctgttcgagagctggtgcaccgacaagcgtaacggcgtcatc
atcgccggatactgtgtggagggaacgctcgccaagcacatcatgacggagcccgacgag
atcgccaccatgtcgggtcagaagcttcctctgaagatgtcggtggactacatctccttc
tccgctcacaccgactaccagcagaccagcgagttcatccgagcgctcaaacctcctcac
gtgattctggtccacggcgagcagaacgagatggctcgtctgaaggcggctctgatccgc
gagtacgaagacaacgacgaggtcgacatcgaagtccacaacccgagaaacaccgaagcc
gtcacgctcaacttcagaggagagaaactcgcaaaggtgatgggctctctggctgataag
aagtgcgttcagggtcagcgggtctccgggatcctcgtcaaacgaaacttcaactatcac
atcctgacgcccggcgacctctccaactacacagatctgtgtatgagcacggtgacgcag
agtcaggcgatcccctacagcggacccatctcgctgctggtcagccagctgcgaagcctc
gcaggagacgtggagcaggtggacggagcggagaagatcaccatcaagatctttaagagc
atcactctggtccatgaagccggcatggtgctgctggagtggatcgcaaacccgctcaac
gacatgtacgccgacgccgtcgctacggtggtcctggaggtccagtccaaccccaacgca
cagaaatttcttgaaggcaaacgagaaaccttcgacatggacgtgttcgtggagagactg
gtgctcatgctgcacgacatgttcggagacgactgcgtgaatttcaaagatggtaaaaac
atgagcgtgacggtggacggagtcaccgcgtccgtcgacccagaaaccagatcggtgacg
tgtgcagaggacgagactctcagggagatggtggaggtcgccgtccatcggctctacgac
gccctcagccccaccttctga
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