Thunnus thynnus (Atlantic bluefin tuna): 137170430
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Entry
137170430 CDS
T11154
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tty03041
]
137170430 (ythdc2)
Enzymes [BR:
tty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137170430 (ythdc2)
Spliceosome [BR:
tty03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
137170430 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
ATPase
Ank
nSTAND3
AAA_22
PhoH
Ank_4
AAA_7
AAA_30
SRP54
Ank_5
AAA_16
T2SSE
Motif
Other DBs
NCBI-GeneID:
137170430
NCBI-ProteinID:
XP_067429918
LinkDB
All DBs
Position
19:29628374..29676008
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AA seq
1402 aa
AA seq
DB search
MSNASTASQKPARSQSTTPRASISNGLKEIHIDEEVKIAVNLSLEKFRYSDQKEMEFPSS
LSSTERAFIHRMAQSLGYISKSKGKGLNRFLTIRKKNGSDKPRPTMPLALSHNSLYFIRS
LLQRFPITSKERMDLQPSSNSSGMSVAAEPDNSCDKNRASGRLNNGIPMVPRRRSPSDLD
SFRCSLPVHERQEEIVQLIRENRVVLVVGETGSGKTTQIPQFLLDDCSRNGEPCRIFCTQ
PRRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRTLMAGDASL
TTVTHVIVDEVHERDGLTDFLLTKMRDVLQKIPTLKLILSSAALDIDLFLQYFGSCPVIH
LKGRQFEVKELFLEDILRLTGFNNKDVKKYKEETQRKEKKQQVLTEWCKAVENSFVEEKQ
RAPVSAPGFLQDSSCLERGDSTFNKPNMNGTEQLEPWLLKEMDACISNIFLNEDQDTFIQ
LFNLILYENVNVDYTHSETGATPLMVTAGRGFLAQMEQLLNMGANINIKASNGWTALDFA
QHFQQIDAVDLLKASIPLGEASSLDESTLVQCGSAELSTEDQELLKLYHHSFDDEWVDLD
LIMDLLHNICSTTTDGATLIFLPGYDEIVSLRDRILYDDKRFSTHSERYQVFTLHSDMQT
LDQKKAMKTSPPGVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDTLSHVSMLKTVW
ISKASALQRKGRAGRCRPGICFHLFSRLRFNNMLEFQVPQLLRMPLQELCLQTKLLAPSS
CPVSEFLSKAPQPPPAHAIRNAVQMLKTIDAMDQYEDLTDLGYHLADLPVEPHLGKMVLC
AVVLKCLDPILTIACTLGYRDPFILPAQGSQKRAALHCRKRFTSSTFSDHMALLRAFQAW
QKARSDGWERSFCEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSEN
WAVVKAALVAGMYPNLVHVNQETSLPSSNKEKKVHFHPTSILSQSQFKENNPARSVQALP
TDWLIYDEMSRGHRMASVRCCSMVTPITVAIFGGCAKLPTSALQEPAAQKDSSLDDLSDS
ETEELAEMKIDEWLVFQLDREAAGLVFELRQKWQNLFIKRIRCPSKPWSQQDEAIIRTLV
SVLAAEEQGAGLQQPTGIGQRPRPMSSEEGPQTFVKNSKSIPQVSSNTTEDKFSRMPAAA
GLLQKKAHSRDESSLPINQLSDPPSSSNSSCSVSMDSPSDSPCPSSSGKQCSKPVSPQLA
FSSVRYFIMKSSNVRNIEISQQKGIWSTTPSNETKLTKAFLENNLIILIFSVQGSGHFQG
YARMVSAISQESCQDWGFMGLGGVFSVEWIRKESLSFHCTQHILNPWNDHKRVQISRDGQ
ELEPQAGSQLLLLWGRNSGNQV
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgccagtacagcctcacaaaagccagccaggagccagagcacaactccccgg
gcctccatttccaacggcctcaaagaaattcacatagatgaagaagtcaagatagcagtg
aacctctctctggagaagtttcgctacagtgaccagaaagagatggaatttccctcctcc
ttgtccagtactgagagggccttcattcatcgtatggcacagtctctgggttacatttct
aagagcaaggggaaaggactgaatcgcttcctcaccatcaggaagaagaatggttcagac
aaacctcggccaacaatgcccctcgcactctcccacaattccttgtatttcatccgcagc
ctgcttcagaggtttcccatcaccagtaaggaacgcatggacctgcagcccagcagcaac
agcagtggcatgtctgtggctgcggagcctgacaacagctgtgacaagaacagggcgagt
gggcgcttgaacaacggcattcccatggtgcctcggaggaggagtccatcggatctggac
agtttcagatgctccttgcctgtgcatgaacgccaagaggaaatcgtccagcttatcaga
gagaacagggtggtgttggtggtgggagagaccggctctggaaaaaccacacagattcca
cagttcctgctggatgactgcagcaggaatggagagccctgcaggattttctgcactcag
cccagacgcctggctgccatcgctgtggctgagagagtggcagctgagagaggagagagt
gtgggccagactgtcggttatcacatcagactagagagcagggtctctcctaagacactg
ctgaccttctgcaccagtggagttttcctcaggacattaatggctggagatgccagcctc
acaactgtcacacatgtaattgtggacgaggtacatgagcgtgatggtctgactgacttc
ctgctcactaagatgcgggatgtgctgcagaagatccccacactgaaactgatcctgtcc
agtgctgctctggatatagacctgttcctccaatactttggctcctgtcctgttatccac
cttaaaggaagacagtttgaagtgaaggaactctttctagaggacattttgaggctgacg
ggctttaacaataaggacgtgaagaaatacaaggaagagacacagagaaaggagaaaaag
cagcaagttttgacagagtggtgtaaggcagtggagaacagctttgtggaggagaagcag
agggcacctgtgtctgcccctggctttctccaggacagcagctgcctggagagaggggac
agcaccttcaacaagccgaatatgaatggaacagaacagctggaaccgtggctgctgaag
gagatggacgcatgcatttccaacattttcctcaatgaagaccaggataccttcattcag
ctcttcaacctcatcctctatgaaaatgttaacgtggactacacacacagtgagacagga
gccacacctctgatggtgacagcaggtcgagggttcctcgcacagatggagcagctgctc
aacatgggggccaacatcaacataaaggcgtccaatggatggactgccttagactttgcc
caacatttccagcagatagacgctgtggatcttctcaaagcctccattcctttgggagag
gcgagtagcctggatgagtccactctggtgcagtgtggcagtgcagagctgagcactgaa
gaccaggagctactcaaactataccaccacagctttgatgatgagtgggtggacctggac
ctcatcatggatctgctgcacaacatctgctctaccaccactgatggtgctactctgatt
tttcttcctggatatgatgagattgtgtcactcagggaccgcatcctctacgacgataag
agattctccacacactctgaaaggtaccaggttttcactctacattcagacatgcaaacc
ctggaccagaagaaagccatgaaaacctctccacctggtgttaggaagataattctttct
accaacattgctgagacaagcatcaccatcaacgatgttgttttcgtcattgattcagga
aaggtcaaagagaaatcctttgacaccctcagtcatgtatctatgttaaagacagtttgg
atctcaaaagccagcgctctacaaaggaaaggaagagctgggcgctgcagaccagggatt
tgcttccacctcttcagtcgactcaggttcaacaacatgctggagtttcaggttccacag
ctgctgcggatgcctctgcaggaactgtgtctgcagaccaaactgctggctccctcctcc
tgtccagtgtctgaattcttatccaaagctccacagcctcctcctgcacatgccattagg
aatgctgtgcagatgctcaagacaatagatgctatggaccagtatgaagatctgactgat
ctgggctaccatctggctgatctacctgtggagccccacctgggcaagatggtgctgtgt
gctgtggtgctcaagtgtctggaccccattctaaccattgcctgtacgcttgggtatcgt
gacccctttattcttcctgctcagggctctcagaaaagagctgctctacactgccgcaaa
cgcttcacttccagtaccttcagtgaccacatggccctgctgagagccttccaggcatgg
cagaaggcccgcagtgatggctgggagagatccttctgtgagaagaattttctgtcccaa
gccaccatggacatgatacttggcatgaggacacagctgctgggacagcttcgtgccatt
ggttttgtgcgggcccgtgggggcagcgacatccgtgatgtgaacctgaactctgaaaac
tgggctgtggtgaaggcagccttggtggccggcatgtatccaaacctggtccatgttaac
caggagacctccctgccttctagtaacaaggagaagaaagtccacttccatcccacatcc
atcctgagtcaatcccagttcaaggagaacaacccagccaggtcagtccaggcccttccc
acagactggttgatctatgatgagatgagccgaggccacaggatggccagtgtccgctgt
tgctctatggtgactcccatcactgtggccatatttggaggctgtgccaaacttcccacc
tctgccctgcaggagcctgctgctcagaaagatagttcactagatgacctcagtgacagt
gagacagaggagctagctgagatgaagattgatgagtggcttgttttccagttggaccga
gaggcagcaggattggtgtttgaactgaggcagaagtggcagaatcttttcatcaagagg
atccgttgtccttcaaagccctggtctcaacaagatgaggccatcatccgaaccctggtt
tctgtgcttgcagcagaggagcagggagcaggcctacagcagcccacagggattggccag
cggccccggcccatgtcatcagaagaggggccccaaacttttgtgaagaattccaagagc
atcccccaagtatcctccaacactactgaggacaaattctctagaatgccagcagctgca
ggcctgcttcagaagaaagcccacagcagagatgagtcttcactgcccataaatcagctc
tctgaccctccgtcctccagcaattcttcctgctcagtgagcatggacagtccctctgac
agcccctgtccctcctcttcaggaaagcagtgctcaaagcctgtgtcccctcagctggcc
ttttcatcagtccggtactttatcatgaagagcagcaacgtcaggaatatagaaatttct
cagcagaagggtatctggtcaaccacaccaagcaatgaaaccaaactcaccaaggccttc
ctggagaataacctcatcatcctcatcttctctgttcagggctctggacacttccagggc
tacgctcgcatggtatcagccatcagtcaggagagctgccaggactgggggttcatggga
ttaggaggggtttttagtgtagagtggatccgcaaggagagtctttccttccactgcacc
caacacatcctcaacccatggaacgaccacaagagggtccagatcagcagagatggacag
gagttagagcctcaggcaggcagccagttgctgttgctgtgggggaggaactctggcaat
caagtttaa
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integrated database retrieval system
