Thunnus thynnus (Atlantic bluefin tuna): 137170840
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Entry
137170840 CDS
T11154
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137170840 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137170840 (mtrex)
03041 Spliceosome [BR:
tty03041
]
137170840 (mtrex)
03009 Ribosome biogenesis [BR:
tty03009
]
137170840 (mtrex)
03016 Transfer RNA biogenesis [BR:
tty03016
]
137170840 (mtrex)
Enzymes [BR:
tty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137170840 (mtrex)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137170840 (mtrex)
Spliceosome [BR:
tty03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137170840 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
137170840 (mtrex)
Ribosome biogenesis [BR:
tty03009
]
Eukaryotic type
Pre-60S particles
Helicases
137170840 (mtrex)
Transfer RNA biogenesis [BR:
tty03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137170840 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
137170840
NCBI-ProteinID:
XP_067430536
LinkDB
All DBs
Position
19:11113552..11136171
Genome browser
AA seq
1037 aa
AA seq
DB search
MADAFGDGLFSVFDEEQQSATSKKIPASLTPEIGKAVVKNGTDKEAGPSPRVKREADSDG
GEEVVFGKKPRLEAVSANDLNLAEFMPQVKVEQVETVEGCSHEVALPASDEYKPLKPRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGSSSGGGKWDPRGR
KGGTRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVF
NNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEK
IKKLEEQYHAIEIPNEESVVTYFKIRQQLAKLGKEIQEFVHKPKYCLPFLQPGRLVKVKN
EDADFGWGVVVNFCKKSNVKTSTDSEPLYVVEVLVHCSKESVKDAATEAAKPAAPGETGE
MQVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPVDDMGI
KDPALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTV
LQMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQA
TALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPH
LMDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAE
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcatttggagacggtttgttcagcgtgtttgacgaggaacaacaaagtgcc
acaagcaaaaagatacctgcctcactgactccagaaataggcaaagctgttgttaaaaat
ggcactgacaaggaggctggtccatctcccagggtcaagagggaggcagacagcgacggt
ggagaggaggtggtgtttgggaagaaaccacgactggaagccgtatctgcgaatgaccta
aatcttgcagaatttatgccacaagtgaaggtggagcaagttgagactgttgaaggatgt
tcccatgaggtcgctctgcctgccagtgatgaatataaacctctgaagccgcgagtgggg
aaagcagccaaggagtatccttttattctcgacccgttccagcgcgaggctattttatgt
atcgacaataaccagtccgtgcttgtgtccgcacacacatctgctggcaagactgtctgt
gctgaatatgccattgcactagccctcagagagaagcagagagtgatctttaccagcccc
atcaaagccctctccaaccagaaatacagagaaatgtacgaagagttccaggatgtggga
ctgatgactggtgacgtcaccatcaaccccactgcctcctgccttgtcatgacaacagag
atcttgaggagcatgctgtaccgaggctctgagatcatgagggaagtggcgtgggtcgtc
tttgatgagatccattacatgagagattcagagcgtggtgtggtgtgggaggagaccatc
attcttcttcctgacaacgtgcattacgtcttcctgtcggccaccatccccaacgctaga
cagtttgcagagtggatttgccacctacataagcagccatgccatgtagtctacacagac
taccggcccactccgctgcaacactacatcttccctgcagggggcgacggactccacctg
gtggttgatgagaatggagacttcagagaggacaatttcaatacagctatgcaggtgctg
agagacgctggggattctgggagcagcagcggagggggcaaatgggacccgagaggacgg
aaaggaggaaccagaggtccatccagtgtgttcaaaatagtgaagatgatcatggagagg
aacttccagcctgtcatcattttcagcttcagcaagaaagagtgtgaggcgtacgctctg
caggtggccaaactggactttaacagggatgatgagaaacgcctggtggaggaagtgttc
aacaacgccgtggactgcctgtcagacgaagacaagaaactcccccaggtggagcatgtg
ctgccgctgttgaagagggggataggaatccatcatggaggcctactgcccatcctgaaa
gagaccatagagatccttttctctgaaggcttgctcaaggccctgtttgccacagagaca
ttcgccatgggcatcaacatgccggctcgcactgtgctcttcactagtgcccggaagttt
gatggcaagaatcaccgctttattacttcaggtgagtacatccagatgtctgggcgtgct
gggaggagaggaatggacgacaggggaattgttatcttcatggtggacgaaaagatgagt
ccagctgtaggcaaacagttacttaagggctcagcagaccctttgaacagtgccttccac
ctgacctacaacatggtgctcaacctgctgcgtgtggaggaaatcaacccagagtacatg
ctggagaagtctttctaccagttccaacactacagggctttgcctggtgtcgtggagaaa
attaagaagttggaggagcagtaccacgccattgagattcccaatgaagaaagtgtggtc
acttactttaaaatcagacagcagctggccaaactgggtaaagagatacaagagtttgtc
cataaacccaagtactgcttgcccttcctgcagcctgggcgacttgtcaaggtaaaaaat
gaagatgctgactttggctggggagtcgttgtaaacttttgcaagaagtctaatgtgaag
accagtacagactcagagccgctgtatgtggtggaggtcttggtccactgtagtaaagag
agtgtaaaagatgcagcgactgaagctgctaaacctgctgctccaggggagactggagag
atgcaggtggtcccagtgatgctccatctcctgacttccatcagctcagttcgtctttac
atccctaaagacctgaggccctttgacaacaggcagctcatgctcaagtctatacaggaa
gtgcagaagcgtttcccagatggagttcctctgctcgaccccgtagatgacatgggcatc
aaagaccctgcactgaagaaagttattcagaaggtggaggccttcgagcaccgcatgtac
tcccacccgctgcacagcgaccccaacttggaatcggtctattctctctgtgagaagaaa
gctctgattgcggcagatgttcgaacagccaagcgagagctgaagaaagctcggaccgtc
ctgcagatggacaagctgaagtgcaggaaaagagttctgcggcgcctcggcttcgccagt
ccttctgacgtcatcgagatgaaagggagggtcgcctgtgaaatcagcagcgccgatgag
ctcctgttgaccgagatggtgttcaacggtctcttcaacgatctaacggtcgaacaagcc
accgccctgctgtcctgctttgtcttccaggagaacgccagtgagatgccaaaactgact
gaacaacttgctgcacccttgagacaaatgcaggagtgcgccaagcgtatagccaaggtg
tctgcagacgccaagctggaggtggacgaggagacgtatctaaaccagtttaagcctcac
ctgatggatgtggtctacgcctgggctaacggagccacgtttgctcagatctgcaaaatg
accgacgtctttgaagggagcatcatccgctgcatgcgccgtctggaggaggtactgaga
caaatgtgctctgcagccaaggccataggcaacactgagctggagaacaagtttgctgaa
ggaataacaaagatcaagagagacatcgtctttgctgccagtctctacctataa
DBGET
integrated database retrieval system
