KEGG   Thunnus thynnus (Atlantic bluefin tuna): 137172889
Entry
137172889         CDS       T11154                                 
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
tty  Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04140  Autophagy - animal
tty04142  Lysosome biogenesis
tty04148  Efferocytosis
tty05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:tty00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    137172889 (vps41)
   04140 Autophagy - animal
    137172889 (vps41)
   04148 Efferocytosis
    137172889 (vps41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    137172889 (vps41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tty04131]
    137172889 (vps41)
Membrane trafficking [BR:tty04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    137172889 (vps41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin zf_RING_Vps8_fungal VPS18_solenoid_2nd WD40_CDC20-Fz Beta-prop_RIG_2nd WD40_Prp19 Beta-prop_HPS5 WD40_WDHD1_1st TPR_7 Beta-prop_EML_2 Vps39_1 TPR_19 Beta-prop_IFT122_1st zf_RING_Vps8 TPR_PEP5_VPS11 TPR_YpiA TPR_17 Beta-prop_THOC3 zf-Vps39_C CFAP251_N Beta-prop_IFT140_2nd zf-RING_5 Helicase_PWI MIB_arm
Other DBs
NCBI-GeneID: 137172889
NCBI-ProteinID: XP_067433576
LinkDB
Position
21:9624918..9644943
AA seq 855 aa
MMAEVEEQGRNPSEEFTDESEEEDSEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLA
LGTHFGKVFLLDIQGNVTQKFEISSVKINQISLDESGEHVGICSEDGKVQVFGLYTREGF
HENFDCPIKVVALHPQFTRSNYKQFVTGGNKLLLYERNWLNRWKTSVLHEGEGSITNIQW
RANLIAWANNVGVKIYDISTKQRITNVLRDNVSLRPDMYPCSLCWKDNATLIVGWGTSIK
ICVVKERNPTEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYFVKENSDHMDEEFR
ARPRLDIIQPLPESCEEISSDALTVRNFQDNECRDYRLEHSEGESLFYIISPKDIVVAKE
RDQDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMAYINHLVEKGDYDSAARKCQ
KVLGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKTDYEGFATL
IREWPGELYNNMAIVQAVTDHLKRDPTNSTLLTTLAELYTYDQRYDRALEIYLRLRHKDV
YQLIHKHNLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKISTDRVVEELADRPELLHVYLH
KLFKRDHHKGQKYHERQIGLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVFL
LSRMGNCRRALQMIMEELEDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGT
HVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQKMHRTQ
MRGVRVDDENICESCHATILPSDMAKPFSVVVFHCRHMFHKECLPSAGTIPGVQFCNICS
AKRRGPGSGILEMKK
NT seq 2568 nt   +upstreamnt  +downstreamnt
atgatggcggaagtggaggagcagggcagaaatcctagtgaggaattcacggatgagtct
gaggaggaggacagcgaggaggagcccaagctgaagtacgagagactctccaatggggtg
acagaaatcctccagaaggatgcagccagctgtatgaccgtccatgacaagtttcttgcc
ttaggtacccattttggaaaggtgttcctgctggacatccaaggaaatgtaactcagaag
tttgaaattagttcagtgaagatcaaccagatcagtctggatgaaagtggagagcatgtg
ggcatctgctccgaggatgggaaggttcaagtatttggtctctatacgagagagggcttc
catgagaacttcgactgtcccatcaaagtggtggcactacaccctcagttcaccagatct
aactacaaacagtttgtcactgggggcaacaagcttcttctgtatgaaagaaactggctg
aatcgctggaagacctctgttctacatgaaggcgagggatccatcactaatatccagtgg
agagcgaatctcatagcctgggccaacaatgtgggagttaaaatatatgacatcagcaca
aaacagcggattacaaatgtgctgcgagacaacgtcagcctgaggcccgacatgtatcct
tgcagcctgtgttggaaagacaacgccactctcattgtcggctggggaacttccattaag
atttgtgtcgtgaaagagcgaaatcctaccgaaatgagagatctgcccagccgctatgtg
gaaatagtgtccgcattcgagactgagtttttcatcagcggcttggcgccgctggcagat
cagctggtcaccctgtactttgtgaaggagaactctgatcacatggatgaggagttccgc
gctcggcctcgtctcgacatcatccagcctctccccgagagctgcgaggagatctcttca
gatgcgctgactgtgcgcaacttccaagacaacgagtgcagagactaccgcctcgagcat
tcggagggagagtcgctcttctacatcatcagtcccaaagacatcgtcgtggccaaggag
cgagaccaagatgaccatatcgattggctccttgaaaagaagaaatacgaggaggcgctg
atggctgcagagatcagtttcaaaaacattaagaggcacgatgttcagaaaatcgggatg
gcctacatcaatcacctggtggagaaaggagactatgacagcgctgcaaggaagtgccaa
aaggttcttggaaaaaatatggaactatgggaaaatgaagtctacaggttcaagactatt
ggacagttaaaggccatcagccagtatttgcccagaggggatctacgtcttagaccggcc
atctacgaaatgatcttgcatgaatttctcaaaactgattatgagggttttgccacactg
atccgtgaatggccgggagagctttataacaacatggccattgttcaagctgtcaccgac
cacctgaagagggatcccactaacagcactttgctcaccacgttggctgaactgtacaca
tacgatcagcggtacgaccgagccttagaaatctacctgagactgagacacaaagacgtc
taccagctgatccacaaacacaaccttttctcttcaatagaggacaagatcgttctcctc
atggactttgataaagagaaagctgttgacatgcttctagacaatgaggacaagatatct
acagacagagttgtggaagaactagctgacagacccgaacttctgcatgtgtacctccac
aaactgttcaagcgggaccaccacaaagggcaaaagtaccacgagagacagattggtctg
tatgccgagtatgaccgaccaaatcttttacctttcctgagagacagcacccactgccca
cttgagaaggctctcgagatttgccagcagaggaactttgtagaggaaaccgtcttcctg
ctcagcaggatggggaactgcagacgagctctgcagatgatcatggaggaactggaggac
gtggacaaggccatagagtttgccaaagagcaggacgatgcagagctctgggaagatctc
atctcttactctattgacaaaccacctttcatcactggcctcctcaataacattggaacc
catgtggatcccatcctgctcatccatcgcataaaggagggcatggagatcccaaacctc
agagattcactagtgaaaatcctccaggactacaatctgcagattctgttgagggaggga
tgtaagaagatcctggtggccgactcgctctctctgcttcagaagatgcaccgaacgcag
atgagaggagtcagagtcgatgacgagaacatttgtgaatcgtgtcacgctacgatatta
ccatcagatatggccaaacccttcagtgtggtagtgtttcactgcagacacatgttccac
aaagaatgtttaccatccgcaggaacaattcccggggtgcagttttgcaacatctgcagt
gcaaagaggcgtgggccaggaagtggaatcctggagatgaaaaagtaa

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