Thunnus thynnus (Atlantic bluefin tuna): 137173259
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Entry
137173259 CDS
T11154
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
137173259 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tty00536
]
137173259 (col11a1a)
Glycosaminoglycan binding proteins [BR:
tty00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137173259 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
137173259
NCBI-ProteinID:
XP_067434085
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All DBs
Position
21:19424526..19529150
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AA seq
1810 aa
AA seq
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MEMQRWSTRWKTKRWLMDSTVTAFITLTLVLQATNVTAAEPVDVLKVLEFQNTPEGVTKT
SGFCTNRRASKPDTAYRVAKQVQISAPTTQLFPGGVFPEDFSILTTLRPKSGLQSFLLSI
YNEQRVQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFRTLNLADGKWHRVAISVEKKTVTI
IVDCKKKITKPLLRSDQASISTNGITVFGTRIQDEEVFQGDIQQLLIVADPKAAYDYCEH
YSPDCDTPHSDSLQAQQPEDEYTTDDLDYTQFYDYSEGATDIVPTDEYSEPQLNNVEGDY
NTDIDYGTVDGTQTQSPFATSGPMEAVEEDAFGDYVTEATAIAPEPTIVPETVDNVDTGA
EPYDFKEYDLKEYDMGEVDNRLYDYGAYDEYGTAPSKPTASYDDEVGPGVAAETDVSEST
VAGAAGAFGQKGEKGEPAVIEPGMLIEGPPGPPGPAGLPGPSGLQGPPGPAGDPGDRGPP
GRAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPM
GLTGRSGPVGLPGSNGQKGEGGDPGPQGPRGIQGPPGQTGKPGKRGRAGADGARGMPGEP
GSKGDRGFDGLPGLPGEKGHRGEPGPMGPVGAPGEDGQRGEDGEIGPRGLAGESGPRGLL
GPRGSPGPPGSPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEK
GPQGRSGLPGLPGADGPPGHPGKEGPPGEKGGQGPLGPQGPIGYPGPRGVKGADGVRGLK
GSKGEKGEDGFPGFKGDMGIKGDRGESGMLGPRGEDGPEGPKGRSGPSGESGPIGPAGEK
GKLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGGRGAR
GPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET
GFQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ
GSSGKDGPPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGSAGPAGPIGLS
GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEP
GQKGSKADKGEQGPPGPAGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGSRGFPGPP
GPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPVGSVGEK
GEQGEAGNPGPPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFP
GDPGPPGEPGVAGTDGEAGEKGEDGEAGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ
GEKGAKGEAGAEGPAGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGSPGQDGPPGPM
GPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGSKGDGGINGAS
GPLGPPGPPGLPGPQGPKGSKGSSGPAGPKGDTGAVGPPGPPGSPGEVIQPLPIRSPKKT
KRSSDMQSDAAGIMDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPE
FPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGSWFSEFK
RGKILSYVDAEGNSINMVQMTFLRLLTASARQNFTYSCHQSVAWHDATSDSYDKALRFLG
ANDEEMSYDNNPYIKALSDGCAMRKGYGKTVMEINTPKIDQVPIIDVMLTDFGDPNQKFG
FEVGPVCFLG
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggctaatggattccact
gtaaccgcattcatcactttaaccctggttctacaggctaccaatgtcacagcagcagag
ccagtggatgttctaaaagtattagaatttcaaaataccccagaaggagtgacgaaaaca
tcaggattttgcacgaaccgaagagcatcgaagccggacacagcttacagagttgccaag
caggtccagatcagtgcccccaccacacagttattccctggaggtgtttttcctgaggac
ttctctatcctgaccacactgcgccccaagtccggcctccagtccttcctgctgtccatt
tacaacgagcagagagtccagcagctgggtgtggaagtgggacgctcacctgtcttcctg
tatgaggatcagactggcaagccagccccggaggactaccccctgttccgtactctcaac
cttgctgatggaaagtggcaccgtgtggccatcagtgtggagaagaagacggtcaccatc
attgtagactgtaagaagaagatcaccaagcctctcctcaggagtgaccaagcctccatc
agcaccaacggcattactgtgttcggcaccagaattcaggatgaggaggttttccagggt
gacatccagcaactcctgattgtagccgatcccaaagcagcgtatgactactgtgaacat
tacagcccagactgtgacactccccacagtgactctctgcaggcccagcaaccagaggac
gagtacactactgatgatttagattacactcagttctatgattactctgagggagccaca
gacatcgttccaactgatgagtattctgaaccacagctaaacaatgtagaaggagattac
aatacagacattgactacggaactgtagatggtactcaaactcagtccccctttgccacg
agtggacccatggaggctgtggaggaggatgcctttggtgattatgtcacagaggccact
gccattgctccggagcccaccattgtcccagaaacggtggataacgtggacactggtgca
gaaccatatgactttaaggaatatgacctaaaggagtatgacatgggcgaggttgacaac
aggttgtatgattacggggcatatgatgagtatggcacagccccatccaaacccacggcg
tcctacgatgatgaggtggggcctggggttgctgctgaaaccgacgtttctgaaagcacc
gttgctggtgctgcaggagcctttggccagaagggagaaaagggcgagccagctgtgatt
gaacctggcatgctgattgaaggaccaccaggaccccccggcccagctggtcttccaggt
ccctcaggcctacaaggacccccaggacctgctggagatcctggtgacaggggtcctcct
ggtcgtgctggtctgcctggtgctgatggtttgccaggtccccctggtacaatgctgatg
ctgccattccgtttcggtggagatggtgagaagggtccagtggtgtcggcccaagaagcc
caagcccaagccatcctctcccaggccagactggctatgaggggacccccagggccaatg
ggtttgacaggaagatcagggccagtgggtctacctggttctaatggacagaaaggtgaa
ggtggagaccctggtcctcagggtccccgtggcatccaagggcctccaggacaaactggt
aaacctggcaaaaggggtcgtgccggagccgacggtgcccgtgggatgcccggagagcca
ggctccaagggtgaccgaggctttgatggactccccggactgcctggtgagaagggacac
aggggagagccagggccaatgggacccgtaggtgcccctggagaggatggacagagaggc
gaggatggagagatcggacccagaggattagctggcgagagtggtcctagaggtttgctg
ggacctcgtggttctccgggaccccctggatcgcctggtgtcgctggagttgatgggcct
cctggtcccaaaggaaacatgggaccacaaggagaaccaggcccacccggtcagcaggga
atccctggaacacagggtcttcctggtcctcaaggccccattggaccacctggtgaaaaa
ggacctcagggccggtcggggttgcctggattacctggagctgatgggcctcctggtcat
cctggaaaagagggtccacctggagagaaaggagggcagggtccactgggtccacagggt
cctatcggttatcctggccctcgtggtgtcaagggtgccgacggtgtccgcggtctgaag
ggttcaaagggagagaagggtgaggatggtttcccaggtttcaagggagacatgggaatc
aaaggagaccggggtgagtctggcatgcttgggccccgtggagaggatggtcctgagggt
cctaagggccgatctggccccagtggagagtcaggtcccattggtcccgctggggaaaag
ggtaaactgggcgtcccaggattgccaggctatccaggaagacaaggacctaagggctcg
agcggtttccctggattccctggagccaatggcgagaaaggagccaggggcgttgcaggc
aaacctggtccaagggggcaaagaggtccgacgggtcctcgtggaggtcgaggagccaga
ggtccaacaggaaaaccaggtcccaagggcacagcaggcaacgatggtcctccaggcccg
cctggtgagagaggacctcaaggacctcagggaccagtgggcttccctggaccaaagggc
ccgcctggaccacctggaaaggatgggctgcctggacaccctggccagcgtggagagaca
ggtttccaaggaaaaactggtccaccaggcccaggaggtgttgttgggccccagggacct
actggagagactggtcccgttggtgagagaggtcaccctggaccccctggtccacccgga
gagcagggtcttccaggtgctgctggcaaggagggagcaaagggagaccctggaccacag
gggtcctccggtaaagacggtccccctggccttcgaggcttccctggagagagaggtcta
cctggtgccacaggtccagcaggtctgaagggaggagaggggccccaaggtccacctggt
cctgttggttcccctggtgagagaggttctgctggtccagctggtcccattggcctatct
ggtagacctggccctcagggtcccccagggcccgctggagagaagggagcacctggtgag
aaaggacctcaaggtccagctggtcgtgatggtgtccaaggtcctgtcggtctgcccggg
cctgctggaccccagggtccacctggagaggatggtgacaagggagaggttggagagccc
ggtcagaagggaagcaaagccgacaagggagaacagggtcctcctggaccagctggtctc
caaggtcccataggtgccccaggtcctgctggagctgatggagagcctgggcccagaggt
cagcagggtatgtttggacagaagggagatgaaggttccagaggtttccctggaccccct
ggtcccattggcctgcaggggcttcctggacctcctggtgagaaaggagagaacggtgat
gtcggccccatgggccctcccggtccccctggtcccagaggtcctcaaggtcctagtgga
gctgatggtccacaaggtcctccaggcggagtgggccccgtgggatctgtgggagagaag
ggtgaacaaggtgaagctggaaacccaggaccacctggagagcctggaactgggggacct
aaaggcgagagaggagaaaaaggagaggctggcccccctggtgctgctggacctgctggt
gccaaaggaccccccggagatgatggtccaaagggcaaccctggtcccgtcggttttcct
ggagaccctggtccacctggagagccaggtgttgctggcacggatggagaggcaggagag
aagggagaggatggtgaggctggtcaaccgggaccaccaggtccatcaggagaagctggt
ccacctggcccacctggcaagaggggacctccgggggccgctggtgcagagggcaggcaa
ggagagaaaggcgctaagggtgaggccggtgctgagggtccagcaggtaaaacaggacca
gttgggccccagggaccttcaggaaagcctggtccagagggtctacgtggaatccccggc
cctgtcggtgaacaaggactgcccggctccccaggacaagatggtccacctggtcccatg
ggccctcctggtcttcctggtctgaaaggtgaccctgggtctaagggtgaaaagggtcac
ccaggtttgattggtctgattggaccccctggagaacaaggagagaagggagaccgaggt
ttgcccgggccccaaggttctcctggtagcaagggcgatggtggtatcaatggagcttct
ggtcctctcggtcccccaggtccccctggtctgcctggtcctcaaggtcccaagggttcc
aagggttcatctggtcccgctggtccaaaaggagacactggtgcagttggtcctcctggt
cctcctggctcaccaggtgaggttatccagcctcttcccatccggtcacccaagaagacc
aagcgctccagtgacatgcagtcagacgcagctggtatcatggactacggcgagggtatg
gaggacatcttcggctcactcaacaacctcaaacaggacattgaacgtatgaaatacccc
atgggcacacaaaacaaccctgccagaacatgcaaagatctgcagctctgccacccagag
ttccctgatggcgaatactggattgatccaaaccaaggctgctcgggggattccttcaaa
gtctactgtaacttcaccgccgggggcgaaacctgcatctacccagataagaagtccaac
ggagtaagaatatcttcatggcccaaagaagtccctgggtcatggttcagtgaatttaag
cgtggtaaaatactttcctatgttgatgcagaaggaaactcaataaacatggtacagatg
accttcctcagactactgacagcctcagccaggcaaaacttcacctacagctgccaccag
tccgtggcatggcatgacgccaccagcgacagctacgacaaggcgctgcgcttcctgggt
gccaacgatgaggagatgtcctatgacaataacccctacatcaaggccctctcagacgga
tgcgcgatgaggaagggctatggaaagactgtgatggagattaatactcccaaaattgat
caggttccaatcatcgatgtcatgttgactgactttggggaccctaaccagaaatttggg
tttgaagttgggcccgtctgcttccttggctaa
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