Thunnus thynnus (Atlantic bluefin tuna): 137174131
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Entry
137174131 CDS
T11154
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tty00536
]
137174131
Glycosaminoglycan binding proteins [BR:
tty00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137174131
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
137174131
NCBI-ProteinID:
XP_067435321
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All DBs
Position
22:9671550..9821126
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AA seq
699 aa
AA seq
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MKTAQARGASKCVEKMEKEVAPQKRQYCRTTVLNIISSLCSVASIAFCIILSINTTDIKN
RVVDLESGNGEHTFIRAPGYSMDDFNSLIQQRVNELLSQRSYENLVKIRTARQASPECSC
PPGPPGKRGRRGRNGEPGMCGPPGPKGDKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGIPGLAGDPGQAGETGPMGPEGPQG
LKGSLGPPGIPGIDGLKGDVGIPGLDGVPGAKGEMGERGEKGDMGEEGPKGDMGEKGDAG
SSAAGIKGEPGEPGRSGHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGD
HGPQGKGERGEIGPVGPKGSQGEAGTPGPKGSKGETGDKGDLGSVGPKGPPGQKGDQGAT
EIIDYNGNIQEALQKITTITVTGPPGPPGPIGPEGIKGDRGMPGLPGLDGERGYKGSKGD
MGMPGASGEKGTTGLPGLPGVNGVKGDKGDSGLPGPQGPSVIGTPGAPGPHGPPGPMGPH
GFPGPKGEPGLHGVKGMRGEPGHKGDRGPLGLPGASGLDGKPGIMGMDGPPGPAGPAGPK
GDRGERGAPGEPGPRGPYGLPGAAGTPGLDGLPGLRGEKGDVGERGEKGEKGKKGKKGPK
GEKGEQGAPGLDAPCPLVCPNCEVEITSQLRRAVVPKQG
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccgcgcaggcgagaggagcatctaagtgcgtggaaaaaatggagaaagaagtg
gcgcctcagaagcgacaatattgtcgcaccacagtgctgaacataatctcgtcattatgc
tcagtggcttccatcgccttttgtatcattctgagcattaacacaactgatattaagaac
cgggttgtggatttggagagtgggaatggcgagcacaccttcatccgtgcccctggctac
tctatggatgattttaattcattgattcaacaaagagtgaatgagctgctctctcagcgc
tcctatgaaaatttagtcaagattcggactgccagacaagcgtcacctgagtgcagctgc
cctccaggacctccgggaaagcgaggaagaagaggccgcaatggagaacctggtatgtgc
ggtcctccaggtccgaagggtgacaagggggatcaaggcgaccagggaccacggatggtc
ttccctaagatcaatcatggctttctttccgctgaccagcagctcataaagcggcggctc
attaagggagatcagggacaagcaggaccacccgggcctccagggccaccgggcccacct
ggcccccgggggcctccaggggacacaggaaaggatgggcccagaggtatacctggtctg
gcaggtgacccagggcaggctggagaaacaggacccatgggacctgaggggccacagggg
ctaaaaggttcacttgggcctcctggtatcccaggtatcgatggactgaagggggatgtt
ggcatcccaggattggacggtgtccctggagccaagggtgaaatgggagagcgaggtgaa
aagggcgatatgggtgaagaagggccgaaaggtgatatgggggagaagggagatgcaggc
tcttctgcagcaggcatcaagggtgaacctggagaacctggacgaagtggacacaaggga
gagccaggacttccagggctgcctggactcccagggataaagggtgagcctggattcctt
ggtccccagggagagccagggctcccaggactcccaggaactaagggtgagagaggcgac
catgggccacaaggaaagggtgaacgaggtgaaattggacccgttggaccaaagggttca
caaggagaggctggcacacccggtcctaaagggtcaaagggggagactggagataaagga
gatttgggatctgtcggtccaaagggcccccctgggcagaaaggagaccaaggagccact
gaaatcatcgactacaacggaaacattcaggaggctttacagaagattaccactattaca
gtaacgggtcctcctggccctcctgggccaattggaccagagggtataaagggggatcgt
ggtatgcccggcctgcccggactcgatggagaaagaggctacaaaggctctaagggagat
atgggaatgcctggagcttcaggggaaaaaggaacgactggtttacctggtttacctggt
gtcaacggagtaaagggggataagggagattcaggtctacctggtcctcaaggtccttca
gtcatcggcactccaggggcaccagggccccatggtccaccaggacctatgggacctcat
ggattccctggaccaaagggggaacctggtttgcatggtgtgaagggcatgcgtggggaa
ccaggccacaaaggggaccgtggaccattaggtctcccgggagcctccggcttggacggc
aagcccggaattatgggcatggacgggcctccgggtccagctggtccagctgggccaaag
ggagacagaggtgagagaggggcaccaggagagccaggaccaaggggaccttatggacta
cctggagctgctggaacaccaggcttggatggtttaccaggcttaaggggagagaaaggc
gacgttggggaaagaggagaaaagggggagaagggaaagaagggcaaaaaagggcctaag
ggcgagaaaggagaacagggtgcccctggattagatgcaccctgcccattggtatgtccc
aactgtgaggtggaaatcacctcccagctgcgtagagcagtcgtccccaaacagggatga
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