Thunnus thynnus (Atlantic bluefin tuna): 137175220
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Entry
137175220 CDS
T11154
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04382
Cornified envelope formation
tty04510
Focal adhesion
tty04512
ECM-receptor interaction
tty04518
Integrin signaling
tty04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137175220 (col4a6)
04518 Integrin signaling
137175220 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137175220 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137175220 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137175220 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tty04147
]
137175220 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
tty00536
]
137175220 (col4a6)
Exosome [BR:
tty04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137175220 (col4a6)
Glycosaminoglycan binding proteins [BR:
tty00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137175220 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
137175220
NCBI-ProteinID:
XP_067437045
LinkDB
All DBs
Position
22:20434717..20568280
Genome browser
AA seq
1714 aa
AA seq
DB search
MKFLICMIAVALAVGSTHGGTKSDEPCAGLDCSGGCKCNPEKGSRGRPGTLGEVGPSGPE
GPRGSLGSPGPKGEKGHLGLRGPSGPKGDKGPMGVPGFQGADGVPGHPGQDGSRGAPGLD
GCNGTRGEPGDPGFGIGPPGPSGLAGPTGPKGQKGEARYITSDNEIVSLPGLRGLDGEPG
IRGPDGPVGLPGPRGPEGFAGPPGPPGPPGPMGSRSDGYQGERGDKGDVGLPGDPGQPMI
NGVVEFVGFPKGDKGFQGEPGRKGIPGYPGNPGPPGPFGYPGEYGEKGIPGYPGARGSPG
FNGPPGAPGQQGYRGDSGYSGQQGYPGAKGEQGDPGVPGPPAYVTGLGTSVQGSPGDPGL
NGLPGAPGDQGAQGFQGPPGRPGIGGYNSGAGSQGFPGTPGPKGEKGNPGIPGYGSEGIP
GSPGLPGSPGPRGPPGPFGLSEPCVIYPDGSIGPKGGPTGTGTSYPGQPGSPGSRGPQGD
RGLTGARGAPGDCACRGGGTSGYQGLPGVPGTDGSPGFPGRKGEIGDTGSPGFNGVQGPP
GRPGPSGTYGRKGEKGTSYYPNLGLGVKGELGSTGPRGPTGETGKPGRDGLPGFPGGPGP
PGDAGYGTVGEKGFPGFPGAKGRPGGPGESGAGYVGTPGFRGEPGEPGIAGLPGAPGLPG
PRGENSCGGVNGTGEGTGQVLPCTIPGEDGAPGYPGLPGPPGPKGQSGFAGGSGRPGFDG
AKGERGDPGFGGQPGPQGFPGPRGDPGGPGGPGSSFDGARGKDGAPGRPGAKGQPGDVVG
ATPGAPGRDGFPGVPGDKGQAGTPGGPGLPGFDGRSGVPGLKGERGVDGYPGSPGLPGPP
GEPSNGITGRPGAPGSKGLSGSPGFPGRKGERGGPGFPGRSGRKGAPGLPGTPGSSGPVG
PPGPPGPGTREGIPGIPGRKGERGFVGLIGFPGLPGRPGSPGFSGGKGLAGGGGRDGVPG
SPGYPGQKGERGYPGLPGAPGPSYPASYAEKGDPGFSGGSGLPGFPGPRGDKGLPGLPGR
QGLPGLPGFSEQSKGQPGQPGYPGQPGGTGYPGQKGEPGIMGFPGTTGPRGDDGAPGFSG
SPGESGLPGGKGIPGDTYVYPGSPGAKGLQGDSGYPGGPGRDGTPGDNGFPGGPGFPGAK
GAPGEAGRPGIMGSPGFPGPKGLPGYPGGKGQDGPPGLPGSSGGPGTKGLPGPPGLDGLN
GLGGPKGLAGTPGGSGGGPPGSPGFPGAKGERGVSYGGGPGFPGAKGERGNQGAPGSPGF
PGRPGPPGETVGSDIPGPMGDSGLPGLDGEYGFRGPTGPPGPPGPGTAQGDRGDNGLPGF
PGSPGRKGDSGIPGGSGLPGSPGFKGEQGDSGYSGGTGLKGLPGDSGYYGLKGPKGLRGP
SGGKGPPGIVLNLPLPPYEQKFGDMGIPGESGLPGTPGGPGQPGLPGRPGPKGRPGAVGK
LGRTGSVGLPGPIGDGGPPGFPGPSGEQGRPGAVGRPGPAGGVGRSVDIGFTLVKHSQNS
QVPMCPLGMAQLWEGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYAS
RNDKSYWLSTTAPIPMMPVSEGQIQPYISRCSVCEAPSQAVAVHSQDTTIPNCPAGWRSL
WIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTV
EPSQEFLYSPGQETLKEGQERIKVSRCQVCSKFL
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatttgtatgatagcagtcgccttggcggttggatctacacacggaggt
accaagtctgacgagccgtgtgcaggcctggactgcagcggaggatgcaagtgcaaccca
gagaaaggcagcaggggtcgtcctgggactctcggtgaggttggtccgagcgggccagag
ggacctcgtgggtctttgggttctccagggcctaaaggagagaagggccaccttggactg
agaggaccatctgggccaaaaggagacaaaggacctatgggagtgcccgggttccaagga
gctgatggagtacctggtcaccctggtcaggacggtagcagaggagcaccgggactggac
ggttgtaatgggaccagaggagaacctggagatcctggctttgggatagggccacctgga
ccatctggtttggctgggcctactgggccaaaaggtcagaaaggagaggctcgatacatc
acgtcggataacgagattgtgagtttacctggtctccgaggactggacggagagcctggt
atcagaggtcctgatggtccagttggtttgcctggtccaagaggccctgaaggattcgct
ggcccacctggtcctcccggtcccccagggccaatggggagccgtagtgacggatatcaa
ggcgagagaggagacaagggcgacgtgggcttgcccggtgaccccggccagccaatgatc
aatggagttgtggagtttgtgggttttcccaaaggagacaaaggattccagggtgaacct
ggacgtaagggaatccctgggtaccctggcaatcccggcccacctggaccttttggctat
cccggtgaatatggagagaagggcattcctggatacccaggagcaagaggctctccaggt
tttaacggacctcctggcgcaccaggacaacagggatacagaggtgattcaggttactcc
gggcaacaaggataccctggagccaagggagagcagggagaccccggagtcccaggacct
cctgcttacgttactggtctgggcacttctgttcaaggatcaccaggtgacccaggtctg
aatggtctgcctggtgctcccggtgaccaaggagctcaagggttccaaggaccaccaggt
cgaccaggaattggtggttataattcaggtgccggctctcaaggttttccagggacccca
ggcccaaagggagagaaaggtaaccctggcatacctggctatggctccgaaggaatccca
ggctccccaggactccctggatcccccggccctcgtggacctcctggcccttttggattg
tccgaaccctgcgtcatctatcctgatgggtccatcgggcctaaaggtggtccgacaggg
acaggaactagttaccctggacagcctgggtcgcctggttccagaggacctcagggtgac
agaggactcacaggggccagaggggctcccggtgactgtgcctgtcgtggaggaggcacc
tcagggtaccaagggttacctggtgttccaggaaccgatggcagccctggtttccctggg
cgaaaaggtgaaattggtgacactggatcccccggctttaacggtgttcagggacctcct
ggtcgtcctggtcctagtggcacctacggccgtaaaggagaaaaggggacgtcttactac
cccaacttgggtttgggagtgaagggagagctcggatctactggacccagaggacctacg
ggtgaaactggaaaacctggcagagatggactgcctggcttccctggaggtcctggaccc
ccaggtgatgctggctacggcacagtcggggagaaaggtttcccggggttcccaggggca
aagggtcgtcctggcggccccggtgagtctggtgcaggttacgtcggaacgcccggcttt
cgcggagagcctggagagcctggtatagcagggttgccaggggcaccaggtttgcccgga
ccaagaggtgaaaacagctgtggaggggttaatggcaccggagagggaacgggccaagtg
ttaccttgcaccatacctggtgaggatggagcacccggttaccccggtttacctggacca
ccaggtcctaaaggtcagtcaggtttcgcaggaggctctggacgtccagggtttgatggt
gccaaaggagaaagaggagaccctggctttggaggccagcctgggccacaaggtttccct
ggaccaagaggtgatcctggaggtccaggtggtccaggatccagtttcgacggagcaagg
ggaaaggatggtgctccagggcgtcctggagccaaaggtcagcctggagatgtagtggga
gccacacctggagctccaggacgagacggttttccgggagtccctggagacaagggccag
gccgggacaccaggagggcctggattacctggttttgacgggcgttccggtgttcctgga
ctgaaaggagagcgtggagtggatggttatcccggtagtcccggccttcctggacctccg
ggtgagccatctaatggcattaccggtcgacccggagctcctggcagcaagggactgagc
ggatcaccaggtttccctggtagaaagggagaaagaggaggcccaggtttcccagggcga
tctggtaggaagggagccccaggactgcccggcacccctggttcatcagggccagtagga
ccacctggacctccaggaccaggaaccagagagggaatcccaggaataccaggaaggaag
ggtgagagaggtttcgttggactgataggtttccctggactaccaggtcgtcctggtagc
ccagggttttctggagggaaaggacttgctggaggaggaggaagagatggagtccctggc
agtccaggataccctggacagaaaggtgagaggggataccccggcctccccggtgcccct
ggtccttcttatcccgcaagctatgcggagaaaggagaccccggtttctctggaggcagt
ggccttcctggcttccccggacccagaggtgacaaaggtctgccaggcctacctggtcgt
cagggtctccctggacttcctggtttctctgagcagagtaaaggacagccaggacagcct
ggataccctgggcaaccaggaggtacaggctatcccggacagaagggagaacctggaatc
atgggattccccggcacgactggaccaaggggtgatgatggtgcacctggtttctctggc
agccctggagaatctggtcttcctggcggcaaaggtatacccggagacacttatgtgtat
cctggaagtccaggagctaaaggcttgcaaggagattcaggctacccaggtggccctggc
agggatggcacccctggtgacaacggctttccaggaggtccaggtttccctggagccaag
ggagctcctggtgaagcaggacggcctggaataatgggctcccctggtttccccggacca
aagggtctgcccggctacccaggaggaaaaggacaagatggacctcctggcctacctgga
agttctggaggacctggaaccaaaggtttgccaggaccccctggtttggatggacttaat
ggccttggtggacctaaaggactcgctggaaccccaggtgggagtggaggaggtccccca
ggttcccctggttttcctggggcgaagggagagagaggtgtctcctacggtggaggtcct
ggcttccccggagcgaagggagagagaggaaaccaaggtgctcctggatccccagggttc
cctggtcggcccggacctcctggtgagactgtgggctcagacattcccggacctatggga
gactcaggccttcctggtttggatggagagtatggtttccgtggtcctacaggtcctcca
gggccacctggtccaggcacagcccagggagacagaggtgacaatgggctcccaggcttc
ccaggatcccccggcaggaaaggagattcaggaatccctggaggctccggactccccggc
agccctggtttcaaaggagagcaaggtgacagtggttacagcggaggaactggtctcaaa
ggtttgcctggtgactctggctactatggactcaaaggacccaagggattaagaggccct
tctggtggtaagggtccccccggcatcgttcttaatttgccacttccaccctatgagcaa
aaattcggagacatgggaattcccggtgaaagcggacttcctggtacccccggagggccc
ggccagcctggattgcctggacgtccaggtcctaagggtcgtcctggcgctgtgggtaaa
ctgggcaggactggctctgttggtctgcccggaccaattggtgacggcggaccccctggt
ttccctggacccagtggagaacaaggtcgccccggtgcagtcggtcgtcccggtcctgcc
ggcggcgtcggccgcagcgtcgatatcggcttcactttggtgaagcacagccagaactcc
caggttcccatgtgtcctctgggcatggcccagctgtgggagggatacagcctgctgtac
gtggaaggacaggagaaggcacacaaccaggacctcggtcagccagggtcctgccttccc
agattcagcaccatccccttcctctactgctcccccaacgaggtctgctattacgccagc
cgcaatgacaaatcctactggctctccacaactgcacccatacccatgatgcccgtgtcc
gaggggcagatacaaccttacatcagcaggtgttcagtgtgtgaggctccatctcaggct
gtagcggtccacagtcaggacacgaccattcccaactgccccgccggctggaggagtctc
tggataggatactccttcctcatgcacacagcagctggcgctgagggcggcggtcagtcc
ctggtgtctcccggctcctgcctggaagatttccgtgctacaccgttcatcgagtgcaac
ggagccaagggcacctgccactactttgccaataagtacagcttctggctaaccaccgtg
gaacccagccaggagttcctctattcaccagggcaggagaccctgaaggaaggccaggag
cgcatcaaagtcagccgctgccaagtctgcagcaagttcttgtag
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integrated database retrieval system
