Thunnus thynnus (Atlantic bluefin tuna): 137176187
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Entry
137176187 CDS
T11154
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03013
Nucleocytoplasmic transport
tty03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137176187 (upf2)
03015 mRNA surveillance pathway
137176187 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137176187 (upf2)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137176187 (upf2)
mRNA cycle factors
P-body specific factors
137176187 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
137176187
NCBI-ProteinID:
XP_067438413
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All DBs
Position
23:complement(22711872..22735271)
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AA seq
1318 aa
AA seq
DB search
MTDVCFATISSMPAERKRSVNMDEKDVCSFSNKEKEKDRDGERRPASARDKAKDEAKVSG
KKDSGKEEKRKRLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEVKRQQEEQERKLQEE
EAKRQREEEAALLKEKEEGHQLHQEAWERHHGRKELRSKNQNAHEGRPEEAFFSRLDSSL
KKNTAFVKKLRTLTEQQRDSLSNDFSSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSL
FHQRYAEFAPLLLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIY
EQLKNIIGTDRETHTHVSVVISFCKHCGDDIAGLIPRKVKLAAEKFGLAFPPSEIISTEK
QQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQK
LLANTQSLADLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFY
ENLVDLKAFVPAILFKDNEKSSQGKDKDEAKDGREGKEGASTTEELELELEALDIADEPL
EMEGPDEVENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMD
FCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRF
HIRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETC
GRFLFRSADSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVKKKRPP
LQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNIWNVKYNSIHCVANL
LAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIF
RTLFSFISFGVNQDGSPSLLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQ
RYIWWKKSIDVWTKDHPFPIDIDYMISDTLELLRPKMRPSCSLEEATKQVTDLEKEVLIK
LGLVMEKDGRSSAMSEGEGLDEEDDDDDEEGGAETEEQSGNESEMNEQEEDEGSENEEEE
REEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQ
RSGEAVKVHQLDVAIPLQLKSQLKKGGSGQQCIGEGDSDISDTMQFVMLTRKGNKQQYKI
LNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTN
RERRPRYQHPKGAPNADLIFKTGGRVKRARNERHERRDKQERQDRKDKQEKTQSYAAE
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttttgctacaattagcagtatgcctgctgaacgcaagcgctcagta
aacatggatgagaaagacgtttgttccttcagtaacaaggaaaaagagaaggacagagac
ggcgagagaagaccagcatctgctcgagataaagccaaagatgaggccaaagtgagcggt
aaaaaagacagtggcaaggaggaaaagagaaagcgtctagaggaggagaagaagaagaaa
gaggaaaaggagcgaaggaagaaagaggaggagaaacagaaagcggaggaagaacagaag
aagaaagaggaggaggtgaagagacagcaggaggagcaggagaggaagcttcaagaggag
gaggctaaaagacaacgtgaggaggaggcagctctgctgaaggaaaaggaagaggggcat
cagctgcaccaggaggcctgggagcgccatcatggcaggaaggaactccgcagcaagaac
cagaacgcccacgagggtcggcccgaagaggccttcttcagccgactggactccagcctt
aaaaagaacaccgcctttgtcaagaagctccgtacgcttactgaacagcagcgagactcg
ctctccaatgacttttcctcactcaacctcagcaagtacatcggcgaggccgtgagctcc
gtcgtggaggccaagctgaagatctctgacgttggctgcgccgtccatctgtgctccctc
ttccaccagcggtacgccgagtttgctccgttgctcttacaggcttggaagaagcacttt
gaagcgaggaaggaagacaaggcgcctaacgtgagcaagctgcgcacagacctgcgcttc
attgctgagctcaccatcgtcggcctcttcacagacaaagagggcctttcgctcatttac
gagcagctgaagaacattatcgggaccgaccgggagacgcacactcatgtgtcagtggtt
atcagcttctgtaagcactgtggtgacgacattgcgggtttgattccccgcaaggtgaaa
ctggctgctgagaagttcggtttggccttccctccgagcgagatcatcagcacggagaaa
cagcagcccttccagaacctgctgagggagtatttcacatctctcaccaaacacctgaag
aaggaccaccgagagctgcagaacattgagaggcagaacaggcgtatcttacattccaaa
ggggagctgagtgaggacagacacaagcagtatgaagagtttgccacttcctaccaaaag
ctgctggccaacactcagtccctggctgacctgctggatgaaaacatgccagacctgcct
caggacaagaccgtgcaggaggagcacggccctggcatcgacattttcacccccggtaag
cctggagagtacgacctggagggagggatctgggaggacgaagacgctcgaaatttctac
gagaacttggtggacctgaaggccttcgttcccgccatcctcttcaaggacaacgaaaag
agcagccagggcaaagataaggacgaagccaaagatggcagagaagggaaggagggagcc
agcaccacggaggagctggagctggagctggaggctctggacatcgcagatgaacctctt
gagatggagggaccagatgaggtagaaaacgaagaactggcgaaaaaactgctggatgag
caagaacaagaggatgaggaggccaacaccgggtcccacttgaagctgatcgtagacgcc
ttcatccagcaactccccaactgtgtcaacagagaccttatagacaaggctgccatggac
ttctgcatgaacatgaacaccaaatccaacagaaggaagcttgtccgagccctcttcacc
gtccccaggcagaggttggatcttctgcccttctactctcgcctggtggcgactcttcat
ccctgcatgtcagacgtggctgaagacctctgctccatgctgaagggagacttcaggttt
catattcggaagaaggaccagatcaacatcgaaaccaaaaataaaacggtcagatttatc
ggggaactggcaaagttcaagatgttctcgaaaacagacacacttcattgtctcaagatg
ctgctgtctgatttcactcatcaccacatagagatggcctgcaccctgctggagacctgt
ggccgcttcctcttcagatccgccgactctcacctgcggaccagcgtcctgctggagcaa
atgatgcgtaaaaagcaggcgcagcatctggacgcccgctacgtgacgatggtggagaac
gcctactactactgcaacccgccgcccatggagaagacggtgaagaagaagaggccgccg
ctgcaggagtacatccgcaagctgctctacaaggacctgtccaaagtcaccaccgagaag
gtgctcaggcagatgcgtaagcttccctggcaggaccccgaagtcaagagctacctgatc
tgctgcatggtcaacatctggaacgtcaagtacaacagcatccactgcgtggccaacctg
ctggccggcctggtggcctaccaggaggacgtgggcatccatgtggtggacggagtcctg
gaggacatccgcctgggcatggaggtcaaccagcccaagttcaaccagcggcgcatcagc
agcgccaagttcctgggcgagctctacaactaccgcatggtggagtcggccgtcattttc
cgcaccctcttctccttcatctccttcggggtcaatcaggacggcagccccagcctgttg
gatcctccggagcacctgttccgcatccgcctggtctgcaccttactggatacctgcggc
cagtactttgaccgaggctccagcaagaggaagctggactgtttcctcatctatttccag
cggtacatctggtggaaaaagagcatcgacgtctggaccaaggaccacccgttccccatc
gacatcgactacatgatcagcgacactctggagctgctcaggcccaagatgagacccagc
tgctccctggaggaggccaccaaacaggtcaccgacctggagaaggaggtgctcatcaaa
ctaggtctggtcatggagaaggacggtcgctccagcgccatgagcgaaggggagggtctc
gatgaggaagacgacgacgacgacgaagagggaggcgcggagaccgaggagcagtcgggc
aacgagagtgaaatgaacgaacaggaagaggatgaagggtctgagaacgaagaagaggag
agggaggaagaggaagaagagaacaccgactacctgacggactccaataaagaaaacgag
acggacgaggagaacaacgaggtgacgatccgcggcggtggactgaagcacgtggcctgc
gccgaggacgaggacttcattcaggctctggataagatgatgctggagaacctgcagcag
cgtagcggcgaggcggtgaaggtgcaccagctggacgtggccattcctctgcagctgaag
agtcagctgaagaaaggaggatcgggacagcagtgcatcggggagggagactccgacatc
tctgacaccatgcagttcgtcatgctcacacgtaaaggcaacaagcagcagtataagatc
ttgaacgtgccgctgtcgtcccacctggcggcgaaccactttaaccagcagcaggccgaa
caggaggaacgcatgaggatgaagaaactcaccctggacatcaacgagagacaggagcag
gaggactatcaggagatgatgcagtccctggctcagcgcccggccccggccaacaccaac
cgggagcgccggcctcgctaccagcacccgaaaggcgctcccaacgccgacctcatcttc
aagaccggaggaagagtgaaaagggcaagaaatgaaaggcatgagaggcgagacaaacag
gagaggcaagacaggaaagacaagcaggagaaaacccaaagctatgcagcggagtag
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