Thunnus thynnus (Atlantic bluefin tuna): 137179608
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Entry
137179608 CDS
T11154
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137179608 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137179608 (patl1)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137179608 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
137179608 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
137179608
NCBI-ProteinID:
XP_067440519
LinkDB
All DBs
Position
3:15121423..15141299
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AA seq
842 aa
AA seq
DB search
MSDVLLRAGSNSRLCVIFMSLDEDCTLEEEDEGLIEEEDEIDQFNDDTFGAGAIDDDWQE
EHKRLAELDERDGLGGLGLGGGGMGGESNLGGAEDSSATHLPPAAGSLPLPSSLPSLNFS
SSSGLPRPDVEDRGRGGDLAESLARLILEADPAIAGVGAAERPGPSPSLSALQGLDRPRV
LPQPSPIPQSTQPHQHPHHPHPQLPSGPSTSGLPPGPPPSSMLSYQQQQHLLRRGTAPMG
QMNSHSIWENSMGFGPVSVTPGLVTHMEDSPLMSIIKEVGLPKQPPQGRNDEGRDLSERV
PPPRSSSPVIGSPPVRAVPIGTPPKQPMSHAMNHQIHHPTPVHVRAPVQHRYPPPFPERL
SPNTLLNIANSPLCRGPFPPGVGPVLSQIQRAQLLNSQVAGFPRGPAPPLLPGGGGFRPF
FGGPPPPHGHRMGPPPPHGPLNHTPPIRHNTTHLHPQHRRMLTQRMQSRGGDRGRIGGDR
RNRDPYSNLMTQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEH
TTKLITPQVAKLEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWN
KRRQILYTVEKMYSLLLEVQDFEKRFVHAPEEDREALLEQHKTNTMQLCSSLQEKEWDDR
VSDEQCVMIMSVRKGKRLISRLLPFLPSPQAAAVVMAIARNLPALAKKDKQDQVLCWLVE
PVSTVIQSLSSSALTDLLQELQGNEGQLATVLHNKFGVTLLYLILSEGERMQSSDPNCQL
MDDNRWTELVFSVTRELLSVPSSSLSPPLFTPPNLLSLFSRYVDRQRLELLQDKLQISAL
SR
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgttttgcttagagcgggtagcaattccagactgtgtgtgatttttatgtcc
ttggatgaagactgtaccttggaggaggaagacgagggactgatagaagaagaagatgaa
attgatcagttcaacgatgacacctttggagctggggccatcgatgatgactggcaggag
gaacacaagcgcctcgctgagctcgatgagcgggacgggctgggagggctggggttggga
ggaggggggatgggaggggaatcaaatttaggaggagctgaggactcatccgccacccat
ctccctcccgctgccggtagtctcccccttccatcatccctcccttcactcaacttctcg
tcttcctctggactgcctcgaccagatgtggaggatcgaggaagaggaggtgacttggct
gagtccctggccagactgatcctggaggccgatccggccatcgctggggtcggagcggca
gagaggcctggtccctccccaagcctgtctgctctgcagggcctggacagacccagagtc
ctgccccagccctctcccatcccacaatccactcaaccacaccagcatcctcatcacccc
catccccagctgccttctgggccctccacttcaggccttcctcctggccctcctccctcc
tccatgcttagctaccaacaacagcaacacttgctgcgcagaggaactgctcctatgggc
cagatgaactctcacagtatctgggagaacagtatgggtttcggaccagtgagtgtcacc
cctggattggttacacacatggaggatagtccactaatgtctataataaaggaggtgggc
ctccccaaacaaccacctcagggcaggaatgatgaaggacgagatttgtcagagagggtc
ccacctccacgctcttcgtcccctgtgattggctcccctccggtgagggcagtgcctata
gggaccccacccaaacagccaatgagccacgccatgaatcatcagattcaccaccccacg
ccggttcatgtgagagccccggtccagcacagataccctcctcctttccctgagcgtctg
tcacccaacaccctcctcaatatagctaactctccactgtgtcgcggcccgttccctccc
ggagttggtccagttctgtctcagattcaacgggcccagctgctcaactctcaggtggcc
ggttttccccgtggtccagcgcctcctttgctaccaggtggtggtggtttcaggcctttc
ttcgggggaccccctcctccacatggtcaccgaatgggcccgccgccccctcatggcccc
ctcaaccacacgccacccatccggcacaacaccacccatctccacccccagcaccgccgc
atgctcactcagcgcatgcagagccgaggaggggaccgtggcaggattggaggggaccgg
cgcaacagggacccctacagtaacctgatgactcagaaagagaaggaatgggtaaccaag
atccagatgatgcaactgcaaagtactgacccttacctggatgactactactatcagaac
tactatgaaaagatggagaaacgtcaggaaagagagagagacagcagcaagaaggaacac
accaccaaactcatcactccacaggttgccaagcttgaacacacctatagaccagttcag
tttgcaggctctctgggtaagctgacggtctccagtgtcaacaacccccgcaagatgatt
gatgcggtggtgacaactcgcacagatgacgaggagaagagagagaagcaggtttggaat
aagaggagacagatcctgtacactgtggaaaagatgtacagtttgctgctggaggttcaa
gactttgagaaacgttttgtccatgcaccagaggaggacagggaagctttgctggagcag
cacaaaaccaacaccatgcagctgtgcagctctctgcaggagaaggagtgggacgacaga
gtgagtgatgagcagtgtgtgatgatcatgtcggtgaggaagggcaagcggctcatttct
aggctcctccccttcctgccctcaccccaggccgccgccgttgtcatggcgattgcccgc
aaccttcccgctctggcaaagaaggacaagcaagaccaggtgctgtgctggttagtggag
ccggtgtctacagtgatccagtcattgtcgagctctgccctcacagacttgctccaggag
cttcagggcaacgagggccaactggccacagtactgcacaacaagttcggtgtgacactg
ctgtatctgatcttgagtgaaggagagaggatgcaaagctctgaccccaactgtcaactc
atggacgacaatcgatggactgagttggtgttttcagtgacgagggagcttctcagtgtt
ccctcctcttccctctctcctcccctcttcacacctcccaacctgctctccctcttctca
cgctacgttgatcggcagaggttggagctgttacaggacaagctacagatctctgctttg
tccaggtag
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