Thunnus thynnus (Atlantic bluefin tuna): 137179713
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Entry
137179713 CDS
T11154
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03030
DNA replication
tty03410
Base excision repair
tty03420
Nucleotide excision repair
tty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
137179713 (rfc1)
03410 Base excision repair
137179713 (rfc1)
03420 Nucleotide excision repair
137179713 (rfc1)
03430 Mismatch repair
137179713 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tty03032
]
137179713 (rfc1)
03400 DNA repair and recombination proteins [BR:
tty03400
]
137179713 (rfc1)
DNA replication proteins [BR:
tty03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
137179713 (rfc1)
DNA repair and recombination proteins [BR:
tty03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
137179713 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
Rad17
AAA_14
RuvB_N
AAA_5
AAA_7
nSTAND3
AAA_17
AAA_33
BRCT_2
AAA_16
AAA_18
NTPase_1
RNA_helicase
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
137179713
NCBI-ProteinID:
XP_067440712
LinkDB
All DBs
Position
3:complement(19535196..19547984)
Genome browser
AA seq
1188 aa
AA seq
DB search
MDIRRFFAPTVVKPAVQKQNGNNKTEEKKNKNPLSSDEEVKKRKKETTKVKSSKTEEKRK
DSEKKRKKHAVIESDSEEEKPAPKSKKSPKEKQKTSKAEPPPKKDPVQYVSETDSDSDNF
QSLKKASKSKQNGSSKVTKSGAESACRGVKEGVKSPVRPSSTQGKTAVKSPSVPATPKSA
PPPQPKRTPTSVLDYFGSTTVQRSEKKLVVSTKRKAPIEDTDDLSDEQIARQLQMDEDME
LEKQVHEDEEFARTLAMLDEEPQAKKARKGSGEKRDHTAFQKKSSTDSAAGSMSSPSKTN
RGGGMSEDVISPSPKKNPTPVKASSKLAMLKKKDDEKDEGAKSKTPITPTKIKISPKKEP
LASVSSDKKFTPKTGTTPTALKTSPKKPESTSTSPNDAEKKKVNSSAYRNFLNREGPRAL
GSKEIPEGAENCLEGCVFVVTGVLESMERDDAKTLIERYGGKVTGNVSKKTTYLVQGRDS
GASKLEKAESLGTKIINEDDLLELIRTKPGKKSKYEIAAEAESKASKTRTPPSRTSRSTP
KAQKISPSKGNSRSPHTPSPSKTGLTQGHGARTKHGGTPPGRGSGHTARRELGLSSSTSS
SSAPEPSSPSLTGEDASLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQNWHKHHSGNA
SKPAVARFGKFGGAKDDGSGHKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSK
NSLKEVVAESLNNTSIENFYKGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIRNS
KIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGIKIPPPALNEII
LASNQDVRQVIHNLSMWSAKDKVMTYNQCKSDAASARKDMKLGPFDVCRKVFVSGEETSR
MSLIDKSDLFFHDYSLAPLFVQENYVHVRPAAAGGDLKSHLVLLSKTADSICDGDLVDRR
IRSGQNWSLLPTQAMYASVIPGELMRGYMSQFPTFPSWLGKYSSTSKHSRIVQDLASHMG
LKTLSSRQAVNLDYLYYLRQALLTPLQKQGAEGAGQTVQLLDDYQLVKEDVESIMEISMW
GGQPDPYSKLDSKVKAAFTRAYNKEVHLTPYSLQAVKKGRRGGGSGGGELELGGEDMEKE
SQESEDEGDGLKADAMIKQKKAKATKESKKEDSGKGKGKGKGKGKAKK
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgacagtcgtgaagcctgcggtgcagaaacaaaat
ggaaacaacaaaacagaggagaagaaaaataaaaatcctctttcttcagacgaggaggtg
aaaaagagaaagaaagagaccaccaaggtcaaaagctccaaaacggaggagaagcgaaag
gatagtgagaaaaaacggaagaagcatgcagtgatagaatcagactcagaagaggagaag
cctgcaccaaagtcaaagaaatctcccaaagagaaacagaagaccagcaaggcagagccc
cctcccaaaaaagatcctgtgcagtacgtctctgaaacagactcagacagtgacaacttt
cagtccttgaagaaagcctccaaatccaagcagaatggctcctccaaagtgacaaagtcg
ggtgcagagagtgcttgtcgaggtgtcaaagagggggtgaagtcacctgtcaggccctct
tctactcaggggaaaactgcggtgaagtctccctctgtgcctgccacgccgaagtcagcc
ccgcctcctcagcccaaacgcacccccacctcagtgctcgactacttcggcagcacaact
gttcagcgctcagagaagaagctggtagtcagcaccaaacggaaggcgccaattgaggac
acagatgatctcagtgatgagcaaattgcccgacagctgcagatggatgaggacatggag
ctggaaaagcaggtgcatgaagatgaggaatttgccagaacattggccatgctggacgaa
gagccacaggcgaagaaggctcgtaaaggctccggtgaaaaacgagaccataccgcattt
cagaaaaagagcagtacagactctgctgctggcagcatgagcagcccgtcaaagaccaac
cgagggggcgggatgtcggaggatgtgattagtccgtctcctaagaagaaccccactcct
gtcaaagccagctccaaactggctatgttgaagaaaaaggatgatgagaaagatgaaggg
gcaaagagcaaaacacccattacacccacaaaaattaaaatctccccgaaaaaggagccg
ctcgcttcagtgagctcggacaagaagttcacacccaagacaggaaccacacccacagca
cttaaaacttctcccaagaaaccagagagcacaagcacgagtcccaatgacgcagagaag
aagaaggtcaactcttcagcttacaggaacttcctcaacagagagggaccaagagccctg
ggctccaaggaaatcccagagggagcagagaactgtttggagggctgtgtgtttgtggtg
acgggggtcctggagtcaatggagagagatgacgccaaaaccctcatcgagcgctacgga
ggcaaagtgacgggcaacgtcagcaagaagaccacctacctggtgcagggcagagacagc
ggagcatcaaagctcgagaaggcggagagtttgggtaccaagatcatcaatgaggatgat
ctgttggagctgatcagaaccaaaccaggaaagaagtccaagtatgagatcgctgcagag
gctgagagcaaagcttcaaagaccaggactccccccagccggacctcaaggagcaccccc
aaagctcagaagatctctccctccaagggtaactctaggtcccctcacaccccgagtccg
tcaaagaccggcctcacacaagggcacggtgccaggaccaaacatggtggcaccccacct
ggaagaggctcaggtcacacggcccggagggagctgggcctttcttcttccacctcttca
tcttcagcccctgaaccatcatccccatcattgaccggggaggacgccagtctgctgtgg
gtagacaagtaccgcccacgctctctgaagactgtgatcggccagcagggggaccagagc
tgtgccaataagctgctccgctggctgcagaactggcacaaacaccacagcgggaacgcc
tccaagccagcagtagcaaggtttggtaagtttggaggagcaaaagacgatggatcaggc
cacaaagctgctctgctctctggacctccaggggtggggaagaccactacagccgccctg
gtctgtgaggagttgggcttcagctacgtggagatgaacgccagctgtactcgcagcaaa
aacagcctgaaggaagtcgttgcagagtcgctcaacaacaccagcattgagaacttctac
aaaggtacatctcagacagtgagcagtaaacatgtcctgatcatggatgaggttgatggc
atggcgggcaatgaggatcgaggaggaatccaggaaatgatcggcctgatcaggaattcc
aagattcccatcatctgtatgtgtaatgatcgtaaccaccagaagatcaggtcactggcc
aactactgctttgatctgcgcttccagaggccgcgagtagaacagattaagggagccatg
atgtccatcgcttttaaggagggaatcaagatcccgcctccggctctcaatgaaataatc
ctagcctccaatcaggatgtccgacaggtgatccacaacctgagcatgtggtcggccaaa
gacaaggtgatgacatacaaccagtgcaagtctgatgcggccagtgcccgcaaggacatg
aaactggggccgtttgacgtctgcaggaaggtgtttgtctcgggagaggagacttcccgc
atgagcctcatcgacaagtccgacctcttcttccacgactactcgctagcgccgctcttc
gtccaagagaactacgtgcatgttaggccagctgctgccggtggtgatctgaagtcccac
ctggtgttgctcagcaagaccgccgattccatctgcgacggagacctagtggacagacgg
atccgctccgggcagaactggtcactgctgcccacccaggccatgtatgccagtgtgata
ccaggtgagctcatgagaggctacatgagtcagttccctacatttcccagctggcttggc
aaatactcctccaccagtaaacattcccgcatcgtccaggatctggcctcgcacatgggt
ttaaagacgttgagcagcaggcaggcggtgaaccttgattacctgtattacctgcggcag
gcgctgctgaccccacttcagaagcagggagcggagggcgccggtcaaactgtgcagctg
ctagacgactaccagctcgtcaaggaggacgtggagagcatcatggagattagcatgtgg
ggcggacagcctgacccctactccaaactggactctaaggtgaaggcagctttcacgcgg
gcgtacaacaaagaggttcacctgacgccgtattccctgcaagcagtgaagaagggccgt
cgtggtggtggcagcggtggcggggagttggagctgggaggggaggacatggaaaaagaa
tctcaggagtctgaggacgagggcgacggcctcaaagccgacgccatgatcaaacagaag
aaggccaaagccaccaaggagtcaaagaaagaggattctgggaaggggaaggggaagggc
aaggggaaaggcaaggctaagaaatga
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integrated database retrieval system
