Thunnus thynnus (Atlantic bluefin tuna): 137181296
Help
Entry
137181296 CDS
T11154
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04510
Focal adhesion
tty04512
ECM-receptor interaction
tty04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137181296 (col2a1b)
04518 Integrin signaling
137181296 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137181296 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tty00536
]
137181296 (col2a1b)
Glycosaminoglycan binding proteins [BR:
tty00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137181296 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
137181296
NCBI-ProteinID:
XP_067442994
LinkDB
All DBs
Position
4:complement(15215576..15269065)
Genome browser
AA seq
1491 aa
AA seq
DB search
MFSFMDSRTLLLLVATQVCLLAVVRCQEDDDQEDAFTCIQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAVDTSPPIGVPGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGLRGSRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQS
GSMGPRGPPGPPGKPGDDGEAGKSGKSGERGPTGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGALGAKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPVGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GSKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GLQGPHGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLSGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGAPGAQGPPGLQGMPGERGGAGIPGPKGDRGDIGEKGPE
GASGKDGARGLTGPIGPPGPSGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGADGQPGAKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGTSGEK
GDAGEDGPPGPPGPSGPQGLAGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGPGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGVKGDRGNTGPAGAPGAPGAPGAS
GPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGEGGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGANGLPGPIGPPGPRGRGGDT
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDVEVD
ATLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVHSKPSNIPRKNWWSSKSKEHKHIWFGETMNGGFHFSYGDESLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattcaaggactctactgctacttgtagcaacccaagtctgtcta
ttagccgttgtgagatgtcaggaggatgacgaccaggaggatgcttttacctgtatacaa
gatggacagcgctatagcgacaaggacgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgcgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccattcggagagtgttgccccatctgcgcagttgatacatctcctcca
attggagtacctggagctaagggtcagaaaggtgaacctggagacattaccgatgttgta
ggaccaagaggaccagctggcccaatgggcccaccaggagagcaaggactccgcggatca
agaggagataagggagagaagggatcccctggtccccgtggcagagatggtgagcctggc
acccccggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggttttgacgagaaggctggcggcgcacagatg
ggtgtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggccccaccgga
tcacctggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacaatct
ggctccatgggtccccgtggtccccctggacctcctggaaaacctggagatgatggtgaa
gctggcaaatctggaaaatcaggggagcgtggacctactggacctcagggagctcgtgga
ttcccaggaactcctggcctgcctggcatcaagggacacagaggttacccaggtcttgat
ggtgcaaagggagagactggagctcttggtgctaagggtgaggctggtgctcccggagag
aatggcgctcctggaccaatgggacctcgtggtttgcctggtgagagaggtcgtcctgga
ccaagtggagctgctggagcacgtggaaatgatggcttgcctggtcctgctggtccccca
ggccctgttggacctgttggagctccaggcttccctggctctcctggttcaaagggagaa
gccggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggc
actcctggatcatccggaccctctggcgcttctggaaaccccggtactgatggtatccct
ggatctaaaggatcagctggtgctcctggtattgctggtgcgcctggtttccccggacct
cgtgggcctcctgggcctcagggagcaactggacctctcgggccaaaaggaacatctgga
gatccaggtattccagggttcaaaggagaggctggacccaaaggagaaattggaccagct
ggtcttcagggaccacatggcccacaaggagaagaaggcaagagaggacccagaggtgag
cctggtgctgctggaccacttggacctcctggagagagaggagcccccggtaaccgtggt
ttccctggacaagatggtcttgctggtcccaagggagcccctggtgagcgtggaccctct
ggtgccagtggtcccaagggtgctaacggtgaccctggccgtcctggagaacctggtctg
cctggtgccagaggccttactggacgtcctggtgatgctggtcctcaaggcaaagttgga
ccttctggagctgctggtgaggatggtcgcccaggaccccccggcccacagggtgcccgt
ggacagcctggtgtcatgggattccccggacccaagggagcaactggtgagcctggcaag
tctggtgagaaaggactgtctggagctcccggtctgagaggtctgcctggcaaagatgga
gaaactggctctgctggaccccccggccctgctggccctgctggagagagaggtgagcaa
ggacagcctggtccctcaggtttccagggtctgcctggacctcctggcccacctggtgag
ggaggcaagcccggagaccagggtgttcctggagaggctggagctgctggtgccactgga
cccagaggagagcgtggtttcccaggagagagaggagctgcagggcctcagggtctgcag
ggaccccgaggtctgcctggaactcctggaactgacggacccaagggagctattggacct
gctggtgccccaggagctcagggaccccccggcctgcagggtatgcctggagagagagga
ggtgctggtattcctggacccaaaggagacagaggtgacattggagagaaaggacctgaa
ggtgcttccggcaaagacggtgccagaggtctcactggtcccattggccctcctggtcct
tctggtcccaacggtgagaagggtgaatctggacctgctggtccttctggtgctcctggt
acccgtggtgctcctggtgacagaggtgagactggacctcctggacctgctggatttgct
ggaccccctggtgctgatggtcaacctggagccaagggagagcagggagaatctggacag
aagggtgatgctggtgcccctggaccccaaggaccatctggtgcccctggacctgccggt
cctacaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggcgccact
ggtttccctggtgctgctggccgtgtcggaccccctggtcccaatggtaatcctggacct
gctggtcctgccggccctcctggtaaagatggacctaagggtgtgaggggagacggtgga
cccccaggcagacagggtgacgctggtcttcgcggtccagctgggacttcgggagagaag
ggagatgctggagaggacggtccccctggtcccccaggtccttcaggtcctcagggtttg
gctggcacacgcggtattgtgggtctacctggacagcgtggtgagagaggtttccctggt
ctgcctggaccttctggtgagccaggaaaacaaggagcttctggtggccccggagaccgt
ggaccccctggacctgttggaccacctggacttactggaccagcaggagagcctggcaga
gagggcaaccccggatctgatggacctcctggtagagatggttctcctggagtcaagggt
gaccgtggtaacactggtccagctggtgctcctggtgctccaggtgctcctggtgcttct
ggcccagttggtcccacaggcaagcagggagaccgaggagagtctggtgcacaagggcct
gctggacctccaggacctgctggagccagaggaatgcctggaccccaaggacccagaggt
gacaagggtgaggctggagagggtggtgagagaggacaaaagggacacagaggcttcact
ggtctgcagggtctgcccggacctccgggtcaagctggagaccagggtgctactggacct
gctggaccttctggacaaagaggaccacctggacctgttggccctgctggaaaggacggt
gcaaatggtctgccaggacctatcggaccccctggacctcgtggtcgcggtggagacacc
ggacctgctggtcctcctggaaaccccggaccccccggtcctcctggtccccccggccct
ggcatcgacatgtctgcctttgctggcctgggtcagactgagaagtcccctgatcctctc
aggtacatgagggccgaccaggcctctggaaacctccgccagcacgatgttgaggtagac
gccacactgaaatccctcaacaaccagattgagaacatccgcagccccgagggatccagg
aagaaccccgctcgcacctgcagagacctgaagctctgccatcctgactggaagagcgga
gagtactggattgatcccaatcagggctgcacagttgatgcaatcaaggtcttctgtaac
atggagacaggggagtcctgcgtccactccaagccctccaacatccctcgcaagaactgg
tggtccagcaagagcaaggagcacaaacacatctggttcggagagacaatgaatggagga
ttccacttcagctacggtgatgaaagcctggcgcccaacactgctgccatccagatgact
ttcctgagactgctgtccactgaggcgtctcaaaacctcacctaccactgtaagaatagc
gtggcctacatggacgcctcaacaggcaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggagatcagagccgagggcaacagccgcttcacgtacagcgtgatggaggac
ggctgcacgaaacacacgggacagtggggcaagacagtgattgaatacagatcacagaag
acctctcgtctgcccatcgtggacattgcccccatggatattggtggagcagaccaggag
ttcggagttgatgtcgggccagtctgcttcttgtaa
DBGET
integrated database retrieval system
