Thunnus thynnus (Atlantic bluefin tuna): 137182005
Help
Entry
137182005 CDS
T11154
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a isoform X1
KO
K14966
host cell factor 1
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03083
Polycomb repressive complex
tty04980
Cobalamin transport and metabolism
tty05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
137182005 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
137182005 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
137182005 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tty01009
]
137182005 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tty03036
]
137182005 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
tty03029
]
137182005 (hcfc1a)
Protein phosphatases and associated proteins [BR:
tty01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
137182005 (hcfc1a)
Chromosome and associated proteins [BR:
tty03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
137182005 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
137182005 (hcfc1a)
MLL-HCF complex
137182005 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
137182005 (hcfc1a)
Mitochondrial biogenesis [BR:
tty03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
137182005 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_HCF
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_FBX42
Beta-prop_ATRN-LZTR1
Kelch_1
fn3
Kelch_FKB95
Motif
Other DBs
NCBI-GeneID:
137182005
NCBI-ProteinID:
XP_067444327
LinkDB
All DBs
Position
4:complement(29409914..29425044)
Genome browser
AA seq
1678 aa
AA seq
DB search
MSAPGSAVSVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELHVYNT
ATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKKLK
AKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELRAGSSV
VGWDIPITYGVLPPPRESHTAVVYTEKTSRKSRLIIYGGMSGCRLGDLWTLDIDTLTWNK
PSVSGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSM
CWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYLETERP
HAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPAAASPVMSATPSQPVNSP
KSPAPAAAAPSAQSLPQTAVLKVAAQQAATGTSVVTVRPSQPGKSPVTVTSLPPGVRMVV
PAQTTQGSPIGSSPQMSGMAALAAAAAATQKIPPSSAGTVLNVPAGATILKTVAVSPGTT
TMKVASPVMVSNPATRMLKTAAAQVGTATGSSPTTTTRPIITVHKSGAVTVAQQAQVVTT
VVGGVTKTITLVKSPLTMGSSGTLISNLGKMMSVVQTKPVQTSAVTGQASTNPLTQIIQT
KGPLPAGTILKLVTSADGKPTTIITTSQAGGTGNKPTILNISGVSPTTTKQGTTIIKTIP
MSAIMTQPGATGVTSSAGMKTPITILTTKVMTTGTPGKIITAVPKLATAAGQQGLTQVVL
KGAPGQPGTILRTVPMSTVGGVRLVTPVTVSAVKPAVTTLVVKGTTGVTTLGTVTGTVST
SLAGGTVDSSNASLVTPITTLGTIATLSSQVISPSAITVSAAQTSLTSASTLPSSTITVQ
NQPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSTEAGAAGEGSGTVTLVCSNPPC
ETHETGTTNTATTSSATMGAGQVCSNPPCETHETGTTNTATTASSNMSVPRVCSNPPCET
HETGTTNTATTASANMGGTQQVCSNPPCETHVTGTTNTATQASSNMNAGQTGTVQRVCSN
PPCETHETGTTNTPSTATSSMGGEQTSTAAGVVQRVCSNPPCETHETGTTNTATTATCSM
ETGEGTAAQQTEEGAEGTSSTEVASSTAASSLVTTTQGRAITTVTQSTPAPGPSVPSISS
ITEGVSTAASSTEEPMQTDETASAEAAPAEEGPAAMETQAEGEAAAATALNLPSELMSEG
QGATLMVTGLSDEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMNESDSAGESQ
QPTNIPIMLTQQELAALVQQQQQLQEAQAAAQQGTVDTSLPTEGLAPADSLNDPSVESNG
HNEMAAAVTSAVASLLPRTTAETLAPSSTFAPSVSVASPAKLQAAAALAEVANGIEGEKQ
APQPTPVKPVVKKENQWFDVGIVKVTNMVVTHFYVPADDSQGDDDSGIMPDYSQMKKMEL
QPGTAYKFRVAGINACGRGAFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVT
SGKIIEYSVYLAIQSNQTAEAKASTPAQLAFMRVYCGPNPSCLVQSSSLSNAHIDYTTKP
AIIFRIAARNEKGYGPATQVRWLQESGKDAASAKPAPKRPGTSPDTKATGPKKARTDQ
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctcctggttcggcggtgtcggtcctgcagccgcggtggaagcgggtcctcgga
tggtccggtcctgtcccccggcctagacatggacacagagctgtggctattaaggagctt
atggttgtctttggcggtggaaacgaagggatagtggatgaattacatgtatacaacacc
gcaacaaaccagtggtttatcccagcagtccgtggtgacattccccctggttgtgctgcc
tatggttttgtctgtgatggcacaagattgctggtgtttggtggtatggtggagtatgga
aagtacagcaacgatctctatgaactacaggccagcagatgggaatggaaaaagttgaaa
gcaaaaaacccgaagaatgggccgcctccttgtcctcgtcttggtcacagtttttccctg
gtgggcaacaaatgctacctgtttggtggactagccaatgacagcgaagacccaaaaaac
aacattcccagatacctgaatgatctgtacacactcgagcttcgtgcgggttccagcgtg
gttggatgggatattcctatcacatatggagtcctgcctccccctcgtgaaagccacact
gctgtggtatacacagaaaagacgagcaggaaatctcgcctgataatctatggagggatg
agcggttgtcgtcttggagatctgtggacacttgatattgataccctgacatggaacaaa
ccatcagtaagcggcacagcaccacttccaagaagtcttcactctgccaccaccatcaca
aacaagatgtatgtttttggaggatgggttcctttggtaatggatgatgtcaaagtggcc
acacatgagaaagagtggaagtgcacaaacactcttgcctgcctaaatctcgactccatg
tgttgggagacagtgttgatggatactcttgaagacaacatccccagggcccgtgctggc
cattgtgctgtggccatcaattccagactatatgtttggagcggccgtgacggttatcgt
aaagcttggaacaaccaggtctgttgtaaagacctctggtacctggaaacagagcggcca
cacgcccctgccagggtgcagttagtccgtgccaacacaaactccttggaggtgagctgg
ggcgccgtctccactgctgacacctacttgctgcagctgcagaaatatgacatccctgca
actccagctgcagcttcgccagtcatgagtgcaaccccctcgcagcctgtgaactctcca
aagagccccgcaccggctgctgcagcaccctctgctcagagcctaccacagacagctgtg
ttaaaggttgcagctcagcaggctgctacaggcacatctgttgtcacagtccgccccagc
cagcctgggaaatcccctgtcactgtgacatcccttcctccaggtgtccgaatggttgtc
cctgcccagaccacccaaggatcgccaattggaagtagccctcagatgagtggcatggca
gctttagctgctgcagcagcagcaacacagaagatcccgccctcttctgcaggcactgtc
ctcaatgttcctgcaggtgccaccattctcaaaaccgtagctgtttcccctggcacaacc
acaatgaaagtggcatctccagtcatggtcagtaacccggcaacacggatgctgaagact
gctgcagcccaggtgggcacagcaactgggtcctctcccaccactaccaccagacccatc
atcactgtgcacaagtctggtgcggtcacagtggcccagcaggcccaggtggtaaccact
gtggtgggaggagtcaccaagaccatcactctggtcaagagtcccctcaccatgggcagc
agtggcactctgatctccaaccttggcaagatgatgtctgtggtacaaaccaagccagtg
cagacatcagctgtcacaggccaggcttccactaaccctctcacacagatcatacagaca
aagggtcccctcccagccggcaccattctgaagctggtgacatccgcagatggaaaaccc
acaaccatcatcaccacttcccaggcaggaggcacaggaaacaagcccactatcctcaac
atcagtggcgtctctcctaccactactaagcagggcaccacaatcattaagaccatcccc
atgtcggccatcatgacccagcctggagctacaggtgtaacaagcagtgcaggcatgaaa
acgcctatcacaatccttaccacaaaggtgatgaccactggaactcctggtaaaatcatc
accgcagtacccaaacttgccactgcagctggccagcagggactgacacaggtggttttg
aagggcgctcctgggcagccaggaactattttgcgcaccgtgcccatgagcacagtaggt
ggtgttcgacttgttacaccagtaactgtgtctgctgttaagcctgctgtcaccaccctg
gttgtcaaggggactactggtgtcaccactcttgggacagtcactggtacagtctctact
agcctggctgggggcaccgtggatagctccaacgcatctctggttacccccatcaccaca
ctgggaaccatcgctaccctgtccagccaggtcatcagcccatctgcgataactgtgtct
gctgcccagaccagcctgacttctgcctccacactgccctcctccaccatcacagtgcag
aaccagcctacccaggtgactctgattacaactcccagtggtgtagaagcccaaccagtg
caggatttaccagtgtccatcctggcgtcaccaacctctgagcagcccagctccaccgag
gctggagctgctggagagggctccgggactgtcaccctggtctgctctaacccgccctgt
gagacccacgaaacgggaaccaccaacacagccaccacctcctctgctacaatgggagca
gggcaggtgtgctcgaacccaccctgcgagacccacgaaacaggaaccaccaacacagcc
acaacggcatcttcgaacatgtctgtgccacgcgtgtgttccaacccgccttgtgaaacc
catgaaactgggacgacaaacacagctaccacagcatcagctaacatgggcggaactcaa
caagtgtgctccaacccaccctgtgagacccacgtgacgggcaccaccaacacagccact
caggcatcttctaacatgaacgcaggccagactggcaccgtgcagagggtgtgctccaac
ccgccatgtgaaacccacgagacagggaccaccaacaccccgtccacagcaacctccagc
atgggaggagaacagaccagcacagcggcaggcgtggtacagagggtttgctccaaccca
ccctgtgaaacacacgagactgggaccaccaacacagccaccactgccacctgcagtatg
gagacaggcgaaggcacagcagcccagcagacagaggagggagcagaaggcaccagcagc
acagaagtggcctcctccactgcagcatctagtctggttaccaccacccagggcagggcc
atcactactgtcactcagtccacaccagcccccggaccctctgtaccatcgatctcatca
atcacagaaggggtgagtactgctgccagctccacagaagaacccatgcagactgatgag
acagcatcagcagaagctgcacctgcagaggagggacccgctgccatggagacacaagca
gagggagaagcagcagcagcaacagccttgaacctgccctcagagcttatgtctgagggt
cagggagccacactgatggtgacggggctgtcggacgaagagctggctgtgactgcagca
gcagaggcagctgctcaggcagcagcgactgaagaagctcaggccctcgccatccaggct
gtcctccaggccgctcagcaagctgtaatgaatgagagtgattcagctggagagagccag
caacccacgaacatccctattatgttgacccagcaggagcttgcagcgctggtccagcag
cagcagcagctgcaggaggctcaggctgctgcccagcagggcaccgtagacacaagctta
cccactgagggtcttgcccctgctgacagcctcaacgatccctctgtcgagagcaatggt
cacaacgagatggctgccgcagtcactagtgctgtggcgtccctgctgccacgtaccaca
gctgagacactagctccatcaagtacatttgcaccctctgtatcagtggcaagtccagcc
aagctgcaagcagcagctgctctagcagaagtcgccaatggtattgagggagagaaacaa
gccccgcagccaaccccagtgaagcctgttgtaaagaaagagaaccagtggtttgatgtt
ggaatcgttaaagtgacaaatatggttgtcacccacttctatgtgccagcagatgattct
caaggagatgatgactctggcatcatgccagactacagccagatgaagaaaatggagctg
cagcctggaacagcttacaagttccgtgttgctggaatcaacgcttgtggtcgtggagct
ttctcagagatatctgcgtttaagacttgcctaccaggattcccaggggcaccttgtgcc
atcaaaatcagcaagagcccagatggtgcccacctgacctgggagccaccctcggtgaca
tcagggaagatcattgagtactctgtgtacctggccatccagagcaaccagacagctgaa
gctaaggcttccacccccgcccagctagcctttatgcgcgtgtactgtggacccaacccc
tcttgcctggtgcagtcgtccagcctctcgaacgcccacatcgactacaccaccaagcca
gccatcattttccgtatcgctgcccgcaacgagaagggctacggtcctgccacccaagtt
cgatggctgcaggagtccggcaaagatgctgcctctgcaaaaccggcccccaaaagacca
ggcacctctcctgatactaaggctactggtccaaagaaagcaaggacggaccagtga
DBGET
integrated database retrieval system
