Thunnus thynnus (Atlantic bluefin tuna): 137182518
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Entry
137182518 CDS
T11154
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137182518 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137182518 (cnot1)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137182518 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137182518 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
137182518
NCBI-ProteinID:
XP_067444857
LinkDB
All DBs
Position
5:4451972..4477552
Genome browser
AA seq
2416 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLISPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSPCERLITP
LQENFEMPFHMDPLSGMASLSLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSTT
NPSTPFGGIGSLSSQLPGMDSGPLGSGIGSGIGSGLGMSAVSTDPFGTRKMSTPGLNPPT
FQQSKMKASDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKD
STIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYV
LEALRKPYGSKMYYFGIAALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYG
QQSRDPPVKMQGSITTPGSLALAQVQAQAQSQQPGVPKAPQPGQPSTLVTTTTTTTTVAK
TTTITRPTPSSFKKDVPPSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSN
MTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETY
RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQ
ELLYVVPFVAKVLESSLRSMVFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNL
SLDINDLKPGNLLKDKEKLKSLEEQLSAPKKETKPPEEMLPVSTTGDFAPFAAPPSTPAA
TTTTTCTTTGPPTPQFSYHDINVYALAGLAPHININVNIPLLQAHPQLKQCVRQSVERAV
QELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPL
LMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDK
RLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPG
FLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALR
SLLEAVALARNSRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRA
YGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVA
FAMQLVKLLLVDERSVSHVTEADLFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAM
IDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV
GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFV
RLIALLVKHSGEASNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLE
LNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKG
WPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDV
IPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDL
DSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMS
TITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAI
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCC
MGQKQAQQVMEGTGAS
NT seq
7251 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaggaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaacttcatctctactctgtgttacgctatcgacaatcccctgcac
taccagaagagtttgaagccatcggcccacttattcacccaattgagtaaagttcttaag
ctcagcaaggtccaagaggtgatatttggccttgctctgctcaactccagcaacgcagac
cttcggggttttgctgcgcagttcatcaagcagaaacttccagacctcctgcggtcatac
gttgacgcagatctcggaggaaaccaggaaggtggcttccaagacattgccatagaggtc
ttacacctactgctctcccatctactgtttggccagaagggagccagtggggtaggccaa
gagcagatcgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagctaagaccatgatggagagttctcttgcagaattcatgcaa
gaagttggctatggcttctgtgcaagtctggatgagtgcagaaacataatcctccagtat
ggggtgagagaggtgacagccagccaggtagccagggtcctgggcatgatggctcgtacc
cactccggcctaactgatggcatcccactacagtccatctctgctcctggaagtggtatc
tggagtgatggtaaggataagaacgacggctcgcaggcacacacgtggaacgttgaggtt
cttatcgacgtagtcaaagaagtgaatcccaacctgaacttcaaagaggtgacatatgaa
ctggaccacccaggctttataatccgggacagcaaaggcctgcatattgtggtgtatggc
attcagaggggattgggcatggaagttttccctgtcgatctcatctatcggccatggaaa
cacgcagagggacagttgtcgttcattcagcactccctgataagcccagaagtgttctgt
tttgctgactacccttgccacactgttgcaatcgacatccttaaggccccaccagaggat
gacaacagggagattgcaacctggaaaagtctggacctggtggagagcctgcttaggctg
tctgaggtgggccagtacgagcaggtgaagcagctgtttagcttcccaatcaagcactgc
ccagacatgttggtgctggcattgttgcagatctccacctcctggcacacactgcgtcat
gagctcatctctaccctaatgcccatctttctgggcaaccatcccaactctgccattatt
ctgcactacgcctggcatggacagggacagtctccctccatccgtcagctaattatgcat
tcaatggctgagtggtacatgagaggtgaacagtatgaccaggccaagctgtctcgcatc
ctggatgtggcgcaggacttgaagtctctatcgatgctgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ttgactgacaaaatcagagagcatggggaaccttttatccaggcgtgtgtgacattcctg
aagaggcggtgcccatccattatggggggtctggcccctgacaaggaccagcccaaaagt
gcccagctgcccccagagaccttagccaccatgctggcctgcctgcagtcctgtgctggg
agtgtgtctcaggagctgtcagagacgatcttgaccatggttgccaactgcagcaatgta
atgaacaaagctcggcagccaccaccaggggttatgccaaagggacgtgcccctagcacc
agcagcctggatgccatctcacctgtacaggtatctccatgtgaaagactcatcacgcct
ctgcaggaaaactttgaaatgccctttcatatggaccctctctctgggatggcttccttg
agcctgggaggtacggccacctcccacactcagagcatgcagggttttcccacctcactg
agctcagctttcagtaatccccagtccccagcaaaggccttcccgcccctctcaaccacc
aatcccagcacaccatttgggggcattggcagcttgtcctcacagctccctggtatggac
tctggtcccttgggctcaggcatcggctctggtattgggtctggcctggggatgtcagca
gtcagcaccgatccatttggcaccaggaagatgagcacaccaggcctgaacccacctacc
tttcagcagagtaagatgaaggcctctgacctttctcaggtgtggcctgaggcaaaccag
cactttagtaaggagatagacgatgaagcaaacagttacttccagcgcatctacaaccac
ccacctcacccgactatgtctgtggatgaggtgctggagatgctacagaggttcaaggat
tcaaccatcaagcgggagcgagaggtgttcaattgcatgcttcggaacttgtttgaggag
taccgtttcttcccccagtacccagacaaggagctgcacatcactgcctgcctttttggc
ggcattatcgagaagggtcttgtcacctacatggccctgggccttgccctccgatatgtt
cttgaagcgttaagaaaaccttatggatccaaaatgtattactttggaattgccgcttta
gataggttcaaaaacagactaaaggattaccctcaatattgtcaacacctggcttcaatt
gcccacttcttgcaattcccccaccatttacaagagtgtgtgcagtatatcgagtatggc
caacagtcacgggaccctccggtgaagatgcaaggctccatcaccacccccggaagtctg
gcactggcacaagtacaagcacaggcccagtcgcagcagcctggggtccctaaagcacca
cagccaggtcaacccagcaccctcgtcaccaccactacgactacaaccacagtagccaag
accaccaccatcacaagacccacacccagcagcttcaagaaggatgtgcctccctccata
aacactaccaacattgacactctgctggtggccactgaccaaacagaaaggattgtagag
cctccagagaatgtccaggagaaaatcgcttttatcttcaacaacctctctcagtccaac
atgacacagaaggttgaagagttgaaagagacggtgaaggaggagttcatgccctgggtt
tctcagtacctggtgatgaagcgtgtcagcatcgagcccaacttccacagtctctactcc
aactttctggacactctcaagaaccctgagtttgtcaagatggtcctcaacgaaacatac
aggaatattaaggtcctgttgacctctgacaaggcagctgccaatttctctgatcgctcc
ctgctgaagaacctgggccactggctgggcatgattacactggccaaaaacaagcctatc
ctctatacagatctggaggtgaagtctctgctactggaagcctatgtgaaaggccagcag
gagctactttatgttgttccctttgtggccaaagttttggagtccagtctacggagcatg
gttttcaggccacagaacccttggaccatggctatcatgaatgttctcgctgagctgcat
caggaacatgacctcaagctgaacttaaagtttgagattgaagttctttgtaagaacttg
tctctggacatcaatgatctgaagccgggaaacctgctgaaagataaggagaagctaaag
agcctggaggagcagctgtcggcaccaaagaaagagacaaagcctccagaagagatgctc
ccagtttctaccacaggagactttgctccatttgcagctcctccatcaaccccagctgcc
accaccaccaccacttgcacaaccactgggccccccaccccacagttcagctaccatgac
atcaatgtgtatgccttggcaggcctggccccacacatcaatataaatgtcaacatccct
ctactacaggcccatcctcagctgaagcagtgtgtgcggcagtcagttgaacgggccgtc
caagagctggtgcaccctgtggttgatcgctctatcaaaattgccatgacaacctgtgag
cagatcatcaggaaggactttgccctggattcagaggagtcccgcatgcgtgtggctgcc
caccatatgatgagaaatctgaccgctggcatggcaatgatcacctgccgcgagccgctg
ctcatgagcatcgccaccaaccttaagaacagctttgctgctgcacttagagcaccaact
ccccaacagagggagatgatggaggaggctgcagccaggattgcccaagacaactgtgaa
ttggcttgctgcttcattcagaagacagctgtggagaaggctggccctgaaatggacaag
agactagccacggagtttgagctgaggaaacacgcacgccaagaaggacgtcgttattgt
gatccagtcgtgctgacttaccaggctgaacgtatgcctgagcagatcagactcaaggtg
ggaggagtggaccccaaacaactggctgtatatgaggagtttgccaggaacgttccaggt
ttcttgcccagtaatgatctctctcagcccactggcttcttggctcagccaatgaagcaa
caggcatgggccacagatgatgttgctcagatctacgataagtgcatggcagacttggag
cagcatcttcacgccatccctccagctcttgccatgaaccccctgacccaggccctgcgc
agtctgctggaggctgtagccttggcgaggaactccagggatggcatcgcagcccttggc
ctgttgcagaaggctgttgaaggtcttctggatgccactagtggggctgatgctgacttg
ctgctccgctacagggagtgccacctgctggtacttaaagccctacaggatggacgtgcc
tacggaccacagtggtgcaacaagcagatcaccaggtgtctgattgagtgccgtgatgag
tacaaatacaacgtggaggcagtggagcttttgatcaggaaccaccttgtgaatatgcag
cagtatgatctgcacctggcacagtcaatggaaaacggactgcactacatggcagttgca
ttcgccatgcagttggtgaagctgctgctggtggatgaacgcagcgtcagccacgtcaca
gaagctgatctcttccacacaattgagactttaatgaggacctgtgcacactctagagcc
aacgcacctgagggtcttccccagctgatggatgtcgttcgctccaactatgaggccatg
atcgaccgggctcacggcggacccaacttcatgatgcactccgggatctcacaggcatca
gaatatgacgatcctcctggcctgagggagaaggcggagtatctcctgagggaatgggtc
aacctgtatcactctgctgctgctggcagggatagcaccaaagccttctctgcttttgtt
ggccagatgcaccagcagggcatcctgaagactgatgacttgatcacacgattcttccgg
ctgtgcacagaaatgtgtgtggagataagctatcgggctcaggctgagcagcaacacaac
ccagcagccagtgcagctatcatcagagccaagtgttaccacaacctggatgcctttgtg
aggctcatagccctgctggtcaaacactctggagaggcctctaacacagtgacaaaaatc
aacctcctcaacaaggtgctgggtattgtcgttggggtgttgatccaggaccacgatgtc
cgtcagacagaattccagcagctgccgtaccaccgcatcttcatcatgctgctgctggaa
ctcaatgcccccgagcacgtcctcgagaccatcaacttccagacactcacagccttctgc
aataccttccacatcctgagacccaccaaagcacccggctttgtgtacgcctggctggaa
ctcatctcccatcgcatcttcatcgccaggatgttagcacacacaccacagcagaagggt
tggcccatgtacgcacagctgctgattgatctcttcaagtacctggcccctttcctgagg
aatgtagagctcaacaaacctatgcaaatcctctacaagggcacactgcgagtgctcctg
gtcctgctgcatgacttcccagagttcctgtgtgactaccattatggcttctgtgatgtt
atcccacccaactgcatccagctccgcaacctcatcctcagtgcctttccacgcaacatg
aggctccctgaccctttcacacccaatctcaaggtggacatgctgagtgagatcaacatc
gctccccgtatcctcaccaactttacaggcgtcatgccttctcagttcaagaaggatctg
gactcatatctgaagacccgttcaccggtcactttcctgtctgagctgcgcagcaacctg
caggtgtcaaatgagccaggaaaccgctacaacatccagttgatcaatgctctagtgttg
tatgtaggcacacaggcaatcgctcacatccacaacaagggcagcaccccctccatgagc
actatcacccactctgcacacatggacatcttccagaacctggccgtggacctggacaca
gaggggcgttatctgttcttgaacgcgatcgccaatcagctacgctacccaaacagccac
actcactacttcagctgcaccatgctttatctgtttgctgaggccaacactgaggccatc
caggagcagatcaccagggttctgttggagaggctgatagtgaaccggcctcacccgtgg
ggtctcctcatcaccttcatcgagctgatcaagaatcctgccttcaagttctggagtcac
gactttgtgcactgtgcccccgagattgaaaagctgttccagtcagtagcccagtgctgc
atgggacagaagcaggcccagcaggtgatggaaggcactggtgccagctag
DBGET
integrated database retrieval system
