Thunnus thynnus (Atlantic bluefin tuna): 137183305
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Entry
137183305 CDS
T11154
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tty04121
]
137183305
Enzymes [BR:
tty01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
137183305
Ubiquitin system [BR:
tty04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
137183305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
137183305
NCBI-ProteinID:
XP_067446373
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All DBs
Position
5:23423918..23546421
Genome browser
AA seq
902 aa
AA seq
DB search
MICPTPCGEKHQIRQVLNSGGMESQTKPDAGHRFGGVCQKGCGLQLSDEDVGKGDHCCVD
ALRTVTDALEERSATLEHEARMARLRWNRREQSLLAKVSTLQNEAQLAALKYQRRLHQYM
VHINSIAEQVIGYYKSDLRTTADMQSQTSEKATCEEGEEVKEVNGKELSKSSHEETVETF
RTAKDPVVVQVIRRTPSGRPHGPPQEIHVVDVCTQTDITFEHIMALAKLRPSTPPVPDVC
PFLLSDSCHSLHTMDQDYYEGTDYLSPVPADGERTEEFEYEEVELCRLSSQEKLGLTLCY
RTDEEEDVAIYVSEISPNSIAAKDGRIREGDRILQINGQDVQDREEAMAALSNEECRNII
LLVARPEMQLEEAWLDDEHSEFLEQLKMEMLEEQQREEMELAALQEEQENEQKEDDDKPT
CSTLPHHKDSVLSIKDRMESSEHNVLAHIQRRLSQCLRDNRDTHRITSSTGLEDKEDEDD
EETEGDRFQQLLELKCQIRNSGEYDLFYSRRSTIECSMGEQGGVQHELRMLNEELRSIEL
ECQNIMQAHKLRKGQQSPSTGHSAPSTKNQSLHRGEPTRGKLADINERLEKSDKDSSSAY
NTAESSRSTPLAMDRSPEHSLQRMVSLTNQRNLCSGLATGHSLSPSPIPGCRAPVLGKSS
SPDHSNPSESDQTPQAEEEGRGKLKPCASQIPYFSPSHSSQHRQINIPAHARHYQSYMQL
IQQRSAVEYAQSQLSLLSVCKEPQRPINEPKMEWKVKIRSDGTRYITKRPVRDKILRERA
LKIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQHLVRAKEQRKRREFMQRSRLESLREN
PQSSSEGRKEVSIIELSHKKMMKKRNKKILDNWMTIQELMTHGTKAPEGAKVHNAFLSVT
TV
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgatttgcccaaccccttgcggagaaaagcaccaaatccgccaagtgttaaactcaggc
gggatggagtcgcaaacgaagccggacgccggtcatcgttttggaggtgtttgtcagaaa
ggatgcggactacagctgtccgatgaagacgtcggtaaaggggatcactgctgtgtggac
gcgctccgcacggtcaccgatgctctggaggagagaagtgcaactttggagcatgaagcc
cggatggcgaggctcaggtggaacaggagggagcagtctctgttagccaaggtgtcaact
ctgcagaacgaggctcaactcgctgccctcaagtaccaacggaggctgcatcaatacatg
gtgcacattaacagcattgcagagcaggtcattgggtactacaagagtgacttgaggaca
actgctgacatgcagagccagacatcagagaaagcaacatgtgaagagggagaagaggtc
aaagaggtgaatggaaaagagttgtccaagtccagccatgaggagactgtggagaccttt
cgcactgccaaggaccccgtcgtggttcaggtcatcaggcggacccccagtggccgaccc
catggcccccctcaggaaatccatgtggtggatgtgtgcactcagactgacatcaccttt
gaacacatcatggcgctggcaaagctccggccttcaacccctcctgtgcctgacgtctgt
cccttcctgctctctgacagctgtcattctctgcatacaatggaccaggattactatgaa
ggaacagattacctctcccctgttccagcggatggagagaggacagaggagtttgaatat
gaggaagtggaattgtgtcgactcagcagccaagagaagttggggctaactctgtgctac
aggacagatgaggaagaggatgtggccatctatgtcagtgagatcagtccaaacagcatt
gctgccaaagacggacgtatccgggagggggatcgcattttacagattaatggtcaagat
gtacaggacagagaagaagcaatggctgcactctccaatgaagagtgtaggaacatcata
ctgctggttgccagacctgagatgcagctggaggaggcctggctggatgatgagcacagt
gagttcctggagcagctaaagatggaaatgttggaggagcagcagagagaggagatggaa
ttggctgcccttcaggaggagcaggagaatgaacagaaagaagatgatgacaagcccacc
tgttccacactccctcatcataaggacagtgtactgagtataaaagacagaatggagagc
tctgagcataatgtcctggcacacatccagagacgtctgtcccagtgcctgagagacaat
cgggacacacaccgtatcaccagctccacagggctggaggataaagaggatgaggacgat
gaggagactgagggtgaccgtttccagcagctcttggagctgaagtgtcagatacgaaac
agcggtgagtacgacctgttctacagccgccgcagcaccattgagtgcagcatgggggag
cagggtggcgtacagcatgagctacgcatgctcaacgaggagctgcgcagcatcgagctt
gaatgtcagaacatcatgcaggcccacaagcttcgtaagggccagcagtctccatccacg
ggccactctgccccctccaccaaaaaccaaagcctccatcggggtgagccaacaagaggt
aagctggcagacattaacgagaggctggaaaaatcagacaaggacagctccagtgcctat
aacacggcggagagttcacggagcacccccctggcaatggatcgctccccagagcactca
ctccagaggatggtcagtctcaccaaccagaggaacctctgcagtggccttgccacgggc
cactcacttagcccaagccccatcccaggatgccgtgctccagtcttgggcaagagcagc
agccctgatcacagcaatccttctgagtcagaccaaacacctcaggctgaggaggagggg
agggggaaattaaagccatgtgcttcccagattccttacttctctccatcccacagttcc
cagcatcgacagatcaacatcccagctcatgcccgccactaccagagctacatgcagctg
atccagcagcgttcagctgtagagtacgcccagagccagctcagcctgctcagtgtctgc
aaagagcctcagaggcccattaatgagcccaagatggagtggaaggtcaagatccgcagt
gacggcacacgctacatcaccaagaggcctgtgagagacaagatcctgagggagcgagca
ctaaagattaaggaagagcgtagtgggggaatgaccacagatgatgatgcaatgagtgaa
atgaagatggggaggtattggagcaaagaggaaagaaagcagcacctagtcagggcaaag
gaacagaggaaaagacgagagttcatgcagcgcagtcggctggaaagcttgagggagaac
cctcagagcagcagcgagggtcgcaaggaagtcagcattatagagctcagccacaaaaag
atgatgaagaaacgcaacaagaagatcctggacaattggatgaccatccaggagctgatg
acccatggtactaaggcccctgagggagccaaggttcacaacgccttcttatcagtcact
actgtataa
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