Thunnus thynnus (Atlantic bluefin tuna): 137184671
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Entry
137184671 CDS
T11154
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03015
mRNA surveillance pathway
tty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137184671 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
137184671 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137184671 (pabpc1l)
03041 Spliceosome [BR:
tty03041
]
137184671 (pabpc1l)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137184671 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
137184671 (pabpc1l)
Spliceosome [BR:
tty03041
]
Complex C
Other components
Complex C specific factors
137184671 (pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RBD_DEAH11
RRM_occluded
RRM_3
RBD_RDR6
YflT
Motif
Other DBs
NCBI-GeneID:
137184671
NCBI-ProteinID:
XP_067448659
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All DBs
Position
6:21333179..21346247
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AA seq
654 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDDKGSKGYGFVHFETQEAANRAIDTMNGMLLNDRKVREKGKQLASGIV
NPKAHFLGTNCQYTLFSFVGHFKSRKEREVEFGTKAMKFTNVYIKNFGEDYTDDKLKEVF
STFGRTLSVRVMKDDKGRSRGFGFVNYANHEDAQKAVDEMNGKEINGKIIYVGRAQKRLE
RQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDDRLRKEFSPYGTITSAKVMTDGSQ
SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRLATMRT
VSSPIIDSYQQAAYYMSVPQPPSRSYYNHNAVSNMRPVPCWTGQAPRPQGPYSSQFGGSV
PRRGSTPIATVRQASTQAPRVVSSSQKTSNIGTQTVGGRTDMPGVTRSGQYKYSSAVRNP
QQVITVPAPMTRLQVIPAPVMEPPVHVQGHEPLTASMLAAAPLMDQKQLLGERLYPLIHA
VHPNLAGKITGMLLEIDNSELLHMLESPESLHSKVDEAIAVLQAHQAKECSPKK
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggaccagcatatcccctcgcctctttgtatgtaggggatctgcatcct
gatgttacggaggccatgctttaccagaaattttctcctgctgggcccatcatgtcaatc
cgtgtgtgccgtgacattatcactcgcagatctctgggatacgcctacataaacttccag
caaccagctgatgcggagtgcgccctcgatacaatgaactacgatgttatcaagggtcgg
cctatccgaataatgtggtctcagcgtgaccccggacttcggaagtctggtgtgggtaac
atctttatcaagaacatggatgagtctattgacaacaaggccctgtatgataccttctca
gcctttgggaatattttgtcctgcaaggttgtttgcgatgacaaaggatccaaaggctac
ggctttgttcactttgagactcaggaggctgcaaaccgggccattgacaccatgaatggg
atgctgctgaatgacaggaaagttcgagagaaaggtaaacagttggcatctggcattgtc
aacccaaaggcccatttcctggggacaaattgtcagtacaccctgtttagttttgtcggc
cactttaaatcccgcaaggagcgagaggtggaatttggcaccaaagccatgaagttcacc
aatgtctacattaaaaactttggtgaagactacactgatgacaaactcaaagaagtcttc
tctacattcgggaggactctgagtgtgcgagtgatgaaggacgacaagggccgttcacgt
ggatttggctttgtaaactacgcaaaccacgaggatgctcaaaaggcagttgatgaaatg
aatggaaaagagatcaatgggaaaatcatctacgtggggcgggctcagaagcggctggag
cgccagggagagctcaagcgcaagtttgaccagatcaaacaggaccgcatccagcgctat
cagggagtgaatctctacgtgaagaacttggacgacagcatagatgacgacagattgcgg
aaggagttttccccctacggcaccatcacgagtgctaaggtcatgacagatggctcccag
agcaaaggctttggctttgtctgtttctcttcgcccgaggaagcaacaaaagcagtgact
gaaatgaatggaagaattgttgcaacaaagccgctgtacgtggctctggctcagcggagg
gaggagcgtaaagcgatcctcaccaataagtacatgcagagactcgcaaccatgaggacc
gtgtcaagtccgatcattgactcgtaccagcaggctgcatactacatgagcgtaccgcag
cctccctctcgctcctactacaaccacaatgctgtcagcaacatgagaccggtgccttgt
tggacgggacaagcacccagaccacagggcccgtactcatcccagtttggaggttctgtt
cctcgacgcgggtcgactcccatcgctacagtcagacaggcctccacccaggcgccgcgt
gttgtaagttcatcacaaaagacaagtaatatcgggactcagactgtaggagggcgcact
gacatgcctggtgtgaccagaagcggtcagtacaagtactcatctgcagtgaggaacccg
cagcaggtcatcactgtacctgcacccatgacaagactacaggttattcctgcacctgtg
atggagccaccagtgcacgttcaaggccacgagccactcaccgcctcgatgctggccgca
gctccactcatggatcagaaacagcttctcggtgagcgattgtacccgctgatccacgcc
gttcacccaaacctggctggaaaaatcacaggaatgctgttagagatcgacaactctgag
ctgctgcacatgctggagtcgcccgagtccctgcactctaaggtggacgaggcgatcgct
gtcctgcaggcccaccaggcgaaggaatgctctcccaaaaagtga
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