Thunnus thynnus (Atlantic bluefin tuna): 137184784
Help
Entry
137184784 CDS
T11154
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04510
Focal adhesion
tty04512
ECM-receptor interaction
tty04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137184784 (col2a1a)
04518 Integrin signaling
137184784 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137184784 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tty00536
]
137184784 (col2a1a)
Glycosaminoglycan binding proteins [BR:
tty00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137184784 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
137184784
NCBI-ProteinID:
XP_067448874
LinkDB
All DBs
Position
6:23793293..23818003
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADASAPIETIGAKGQKGEPGEIADVVG
PRGPSGPMGPPGEQGPRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPAGPPGPPGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGEAGEPGPAG
SMGPRGPPGPSGKPGSDGEAGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGETGAAGAKGESGAAGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGAEGQQGPRGEAGTPGSPGPAGASGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAG
PQGPPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPG
AAGPKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKPGEKGLVGRTGLRGLSGKDGETGPAGPTGPAGPAGERGEQG
QPGPSGFQGLPGPSGSPGEAGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGAQGLQG
PRGLPGTPGSDGPKGAIGPAGAAGSQGPPGLQGMPGERGAGGIPGPKGDRGDGGSKGPEG
APGKDGSRGLTGPIGPPGPSGPNGAKGETGPSGPSGAPGTRGAPGDRGEAGPPGPAGFAG
PPGADGQPGAKGELGEGGQKGEAGAPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATG
FPGAAGRVGSPGPNGNPGAPGPAGPGGKDGPKGARGDAGPPGRQGDAGLRGPAGAPGEKG
EPGEDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSSGSAGDRG
PPGPVGPPGLTGPAGETGREGTPGADGPPGRDGSAGVKGERGNTGPAGAPGAPGAPGAPG
PVGPLGKQGDRGESGAQGPAGPPGSAGARGMAGPQGPRGDKGEAGEVGERGQKGHRGFTG
LQGLPGPPGPAGDSGSSGPAGPSGAKGPPGPSGPAGKDGSNGQSGPIGPPGPRGRSGESG
PPGPPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSTDPLRYMRADEASSSLRQHDVEVDS
TLKSLNNQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNM
ETGETCVYPSIAKVPKKNWWTSKSKDRKHVWFGETMNGGFHFDYSQDGPAASAASVQLTF
LRLLSNEASQNLTYHCKNSIAYMDQATGNLKKALLMQGSNDVEIRAEGNSRFTYSVLEDG
CKKHTDRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaagaagaggacgaccaggaggcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtttggaagccagagccgtgtcgtatctgtgtgtgt
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagacaattggtgctaagggccagaaaggcgaaccaggagagattgcagatgttgtagga
ccaagaggaccatcaggccctatgggccccccaggtgagcagggaccacgtggagaagct
ggcgctaagggtgataagggaaatcctggacctcgaggaagagatggtgagcctggcacc
cctggaaaccccggacctgctggcccacctggaccacctggaccaccagggcttggaggg
aactttgctgctcagatggctggaggttttgatgagaaggctggaggtgctcagatgggt
gtgatgcaaggaccaatgggtcctatgggtcctcgtggtcctcctggacctactggagct
cctgggccacagggtttccaaggttcccctggagaggctggagagcctggtccagctgga
tcaatgggacctcgtggaccacccggaccttctggaaaaccaggaagtgatggtgaggct
ggcaaacctggaaaacctggtgagcgtggacctgctgggcctcagggagctcgtggattc
cctggaactcctggacttcctggaatcaagggacacagaggtcatcctggtctggatgga
gcaaagggagagactggtgccgcaggagccaagggtgagtctggtgctgcaggagagaac
ggtgcccctggacccatgggtccacgtggtttgcctggcgagaggggacgtcctggagct
gctggagctgcaggtgcccgtggaaatgatggcttgcccggtcctgctggtccacctggg
cctgttggtcctgctggagctcccggtttcccaggatccccaggagccaagggagaagct
ggtcctactggagcccgtggagctgaaggccaacagggaccccgcggagaggctggtacc
ccaggatctcctggacccgccggagcatcgggtaaccccggtactgatggtattcctgga
gctaaaggatctgctggtgcacctggtattgctggtgctcctggattccccggaccccgt
ggccccccaggaccacagggagcaacaggacctcttgggcccaagggacagtctggagac
cctggtcttcctggattcaaaggtgaagctggacccaaaggagagcttggccctgctggt
cctcaaggtccccctggccctgctggtgaggaaggaaagagaggcgctagaggagagcct
ggagctgctggaccactcggacctccaggagagagaggagctcctggtaaccgtggtttc
ccaggtcaggatggtcttgctggtgctaagggtgcccctggcgaccgtggtgttcctggt
gctgctgggcctaaaggtgctactggagaccctggacgcacaggagagtctggccttccc
ggagccagaggtcttactggtcgtcccggagatgctggtcctcaaggcaaagttggaccc
tctggtgcctctggtgaggatggtcgccccggcccacctggtcctcagggagcccgtgga
cagcctggagtgatgggattccctggaccaaagggagccaatggtgaacctggaaagcca
ggagagaagggtcttgtgggtcgtactggtctgagaggtctgtctggaaaagatggtgag
actggtcctgctggacctactggccctgctggacctgctggagagagaggagagcaagga
cagcctggaccttctggcttccagggtctgcctggaccatctggttccccaggagaggct
ggaaaacctggagatcagggtgttcctggagagggcggagctcctggtgctgttggacca
agaggtgaacgtggtttccctggtgagaggggtggtgctggagctcagggtcttcaggga
cctcgtggacttcctggaacacccggaagtgatggacccaagggagctattggaccagct
ggtgctgctggatcccagggaccccccggcctgcagggtatgcccggagagagaggagct
ggtggcatcccaggacccaaaggagacagaggtgacggcggatcaaaggggcctgaggga
gctcctggaaaggacggttctagaggtttgactggacccatcggtcctcctggcccatct
ggacccaacggtgccaagggtgagactggaccctctggaccttctggtgctcccggtact
cgtggtgctcctggtgaccgtggtgaggctggtcctcctgggcctgctggctttgctgga
cctcctggtgcagatggtcagcctggtgccaagggagagcttggtgagggtggacagaag
ggagaagctggggctcctggacctcagggaccatccggtgctcctggacctgtgggaccc
actggtgtaactggacctaaaggagcacgtggtgctcagggagctcctggtgccacaggt
ttccctggtgctgctggcagagttggatctcctggccctaatggtaaccctggcgctcct
ggccctgctggtcctggcggtaaagatggaccaaagggtgcacgtggtgatgctggaccc
ccaggaagacagggagacgctgggcttcgtggacctgctggtgcaccaggagagaaggga
gagcctggagaggatggaccacctggtgctgatgggccttcaggtcctcagggtctggct
ggatctcgtggtattgttggtttgcctggtcagcgtggagagagaggcttccctggtctc
cctggaccttctggagagcctggcaaacagggatcatctggttctgctggcgaccgcgga
cctcctggacctgtgggaccccctggacttactggacctgccggagagactggaagagag
ggtacccctggagcagatggacctcctggtagggacggatctgctggagtcaagggagag
cgaggtaacaccggtcctgctggcgcccctggagctcccggtgcccctggtgctcctgga
cccgtcggaccactcggcaagcagggagacagaggagagtctggtgctcaaggacctgca
ggacctcctggatctgctggcgctagaggaatggctggaccccaaggaccacgtggagac
aagggagaggctggtgaggttggagagaggggacagaagggtcaccgtggattcactggt
cttcagggtcttcctggacctcctggtcccgctggagatagtggatcttctggacctgca
ggaccaagcggtgctaagggaccacctggaccaagcggacctgctggcaaagatggatct
aacggacagtctggccccattggaccccctggacctcgtggacgctctggagaaagtggt
cctcctggtcctcctggtaatgccggaccccccggtcctcctggacctcctggccctggc
atcgatatgtctgccttcgccggtcttggtcagactgagaagtccactgatcctctcagg
tacatgagggctgatgaggcctccagctccctgagacagcacgacgttgaggttgattcc
acactcaagtccctcaacaaccagattgagaacctgcgcagccctgacggctcccagaag
aaccctgctcgcacctgcagagacctgaaactgtgccaccctgagtggaagagtggtgac
tactgggttgatcccaacattggcagcacagctgatgccatcaaggtcttctgtaacatg
gagactggagagacctgcgtctacccaagcatcgccaaggtaccaaagaagaactggtgg
accagcaagagcaaggaccgcaagcatgtctggtttggagagaccatgaatggaggattc
catttcgactactctcaggacggccctgctgccagcgctgccagtgtccagctgaccttc
ttgaggcttctgtccaatgaagcatcccagaacctcacttaccactgcaagaacagcatt
gcctacatggatcaggctacaggcaacctgaagaaggctttgctgatgcagggctccaat
gatgtggagatccgcgcagagggcaacagccgcttcacatacagcgtgttggaggatggc
tgcaagaaacatacagaccggtggggcaagactgtctttgagtacaaaacacagaaaacc
tcccgtctgccaattgtggacattgctcctatggatatcggaggagcggatcaggagttc
ggagtggatgtaggcgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
