Thunnus thynnus (Atlantic bluefin tuna): 137187580
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Entry
137187580 CDS
T11154
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03013
Nucleocytoplasmic transport
tty03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137187580
03015 mRNA surveillance pathway
137187580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137187580
Enzymes [BR:
tty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137187580
5.6.2.5 RNA 5'-3' helicase
137187580
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137187580
mRNA cycle factors
Common to processing body (P body) and stress granule
137187580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
137187580
NCBI-ProteinID:
XP_067452682
LinkDB
All DBs
Position
8:complement(12788463..12806551)
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDEGLHNGGVDDVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLCETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFL
ALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGAGPGHMAA
MNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRARGSANQGPSQGNGQS
SQVSQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
gccgagctgctcggagcggacacacagggctccgagtacgacttcaccgacttcaccctc
cccagccagacgcaaactcaaggccagactcagagccagctggacggacaggtaaatggt
cctgatgagggacttcacaacggcggggtggatgatgtggccaaagccagtcagcttttg
gccgagctcaatttcgaggaggatgaagaagacacttactacaccaaagacctgcctgtg
cacgcctgcagctactgtggtatccacgatccagcgtgtgtggtgtactgcaataccagc
aagaagtggttctgcaatggacgtggcaacacatctggcagccacattgtaaatcacttg
gtgagggccaaatgcaaagaggtgacgctgcataaagatggaccactgtgcgagacagtg
ctggagtgttacaactgcggctgtcgcaatgtcttcctcctgggcttcatcccggccaag
gctgattctgtggtggtgctactctgcaggcagccctgtgccagccagagtagcctgaag
gacatcaactgggacagctcccaatggcagccactgatccaggaccgctgttttctgtcc
tggctggtgaagatcccatcagagcaggagcagctccgagcccgtcagatcaccgcccag
cagatcaacaagttggaggaactctggaaggacaaccccagtgccaccttggaagacctg
gagaaacccggtgtggacgaggaaccccagcatgtgctgctgcgctacgaggacgcctac
cagtaccaaaacatctttggcccattggtcaaactggaggctgactatgacaagaagctt
aaggagtcccagacccaagacaatataacggtcaggtgggacctggggctgaataaaaag
cggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcaaggt
gatgagatctgcctgcggtacaagggagacctggccccgctgtggaaaggaatcggccat
gtcatcaaagtccccgacaactatggggatgaaattgccattgagttgcggagcagtgtt
ggagcacctgtggaaatcccccacaacttccaggtggactttgtgtggaagtccacttcc
tttgacaggatgcagagcgccctgaagacctttgcagtggacgaaacctctgtgtccggc
tacatttaccacaaactgctgggtcacgaagtggaagatgtcaccatcaagtgccagctg
cccaagcgcttcactgcccagggcctacctgacctcaatcactcgcaggtgtacgctgtg
aagacggtgctgcagaggcctctcagcctgatccagggtcctcctggcactggaaaaact
gttacctctgccactattgtctaccacctgtcccgtcagggcaacggtccagttctggtg
tgtgctcccagtaacattgctgtggaccagttgactgagaagattgacaagactgggttg
aaggtggtcaggctgtgcgctaagagccgggaggccattgagtcacctgtgtccttcctg
gcgctgcacaaccagatcagtaacatggacagcatgccggagcttcagaaactacagcag
ctgaaggatgagaccggcgagctgtcgtctgcggatgagaagcgctacagggccttgaaa
cgcactgctgagagggagctgctcatgaacgctgacgtgatctgctgtacctgcgtcggt
gctggagaccctcgtctggccaagatgcagttccgctccatcctgattgatgagagcacc
caggccaccgagcctgagtgtatggtgcctgtggtgctgggagccaagcagctcatcctg
gtgggtgaccactgccagttgggtcctgtggtgatgtgtaagaaggcggccaaggcaggt
ctgtcacagtccctgtttgaacgcttggtggttctggggatccggccaatccgtctgcag
gtccagtaccgtatgcacccagctctcagtgccttcccctctaacatcttctatgagggc
tccctgcagaatggcgtcactgcagctgaccgcatcaagaagggttttgacttccagtgg
ccacagccggacaaacccatgttcttctatgtgactcaaggccaggaggagattgccagc
tctggaacctcctaccttaacaggacggaggctgccaatgtagagaaaatcaccaccagg
ctgctgaaggcgggagccaagcccgaccagattggcatcatcaccccatatgagggacag
cgctcctacctggtccagtacatgcagttcagtggatccctgcacaccaaactctatcag
caagtggaaattgccagcgtggacgccttccagggcagagagaaggacttcatcatcctg
tcttgtgtccgtgccaatgaacaccagggcatcggcttcttgaatgaccctcgtcgtctc
aacgtggcgctgacccgagccaagtatggtgtgatcattgtggggaaccccaaggccctg
tccaagcagccgctgtggaacaatcttctcaacaactacaaggagcagaaggtgcttgtg
gagggacccctcaacaacctgagggagagcctcatgcagttcagcaaaccccgcaagctg
gtcaacactatcaatcctgggggccgttttatgagcactgcgatgtacgacgcccgtgag
gccctcatccctggctctgcctatgaccgcagcagtgctgcaggacgtccgtccaacatg
tactttcaaactcatgaccagattgggatgatcggggcgggccccggtcacatggcagct
atgaatatccccatacccttcaacctggtgatgccaccaatgcctccgcccagctacctt
ggccagaccaacggccctgctgcaggtcgtggagctatgaagggtaagcctgggcgcggt
gggcgacagagggcccgcggctctgcaaaccagggtcccagtcagggtaatggacagagt
agccaagtcagccaggatggggcctcccagtcgttctcacagggcccactgactcagggc
tacatctccatgagccagccttctcagatgagccagcctggcctctcccagccagagctg
tcccaggacagctacctgggcgatgagttcaagtcccaaatcgacgtggctttgtcccag
gactcgacttaccagggtgaacgtgcataccaacatggtggagtgactggcctgtcacag
tattag
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integrated database retrieval system
