Thunnus thynnus (Atlantic bluefin tuna): 137191927
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Entry
137191927 CDS
T11154
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03015
mRNA surveillance pathway
tty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137191927
09123 Folding, sorting and degradation
03018 RNA degradation
137191927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137191927
03041 Spliceosome [BR:
tty03041
]
137191927
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137191927
mRNA cycle factors
Stress granule specific factors
137191927
Spliceosome [BR:
tty03041
]
Complex C
Other components
Complex C specific factors
137191927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_3
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
137191927
NCBI-ProteinID:
XP_067458524
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All DBs
Position
10:complement(29271240..29277412)
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFGKYGPALSIRVMTDDSGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNMPNAMRPSAPRPQAFNTIRPTTTTNTQVPRM
MASQRMPTQALSQRPTGASATAAPVRAMPQYKYAAGVRNPQQHMASQPQVTMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgagcgcgcccagctacccgatggcctccctgtatgtgggagacctgcaccca
gacgttaccgaggccatgctctacgagaaattcagcccggctgggcccatcctctccatc
agagtgtgcagggacatgatcacccgccggtccctcggatacgcctatgtcaacttccag
cagccggctgatgctgagcgagccctggacacgatgaactttgatgtgatcaaaggcagg
cctctccgcatcatgtggtctcagcgtgacccctcactgaggaagagtggagtgggtaac
atcttcatcaagaacctggacaagtccattgataacaaggccctctatgacaccttttct
gcattcggaaacatcctttcctgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccacgaggctgctgagcgggccattgagaaaatgaatggc
atgttgctcaatgacagaaaagtattcgttggacgctttaaatcacggaaagagagggag
gctgagctcggtgctcgtgccagagagttcaccaatgtttacatcaagaactttggggag
gacatggatgatgagaagctgaaggagctgtttggcaaatatggacccgcactcagtatc
cgtgttatgactgatgacagtggcaaatccaagggatttggcttcgtcagcttcgagaga
cacgaagatgcacaaaaggctgtagatgacatgaatggtaaagagctgaacggcaggcaa
gtgtatgtgggccgcgcacagaagaaaggagagcgccagaacgagctcaagcgcaaattt
gagcagatgaaacaggatcgcatgaccagataccagggagttaatctgtatgtgaaaaac
ctggacgatggcctagatgatgagcgtctgcgcaaagaattctctccatttggaaccata
acaagtgctaaggtgatgatggagggtggccgcagcaaaggttttggcttcgtgtgcttt
tcttctccggaagaggccaccaaagctgtgacagagatgaatgggcgtattgttgccaca
aagccactgtatgtggccctggcccagcgcaaagaggagcgtcaggcacatctaaccaac
cagtacatgcagaggatggccactgtccgtgctgtgcccaaccctgtcctcaacccctac
cagcctgctccaccctcaggctatttcatggcggctatacctcaggcacagaaccgtgct
gcatactactctgccaaccagctggcccagctcaggcccagcccacgttgggccactcag
ggagtgcgtcctcagcacttccagaacatgcccaatgctatgcgcccctcagctcccagg
ccccaggccttcaacaccatccgtcccaccacgaccaccaacacccaggtcccacgcatg
atggcttcccagcgtatgcccacccaggccctcagccagcgccccaccggtgcttcagcc
actgcagcccccgtgcgcgccatgccccagtacaaatatgctgccggtgtacgcaacccc
cagcagcacatggcctcccagccacaggtcaccatgcagcagcctgctgtccatgtccaa
ggacaggagccactgactgcctccatgctggctgctgctcctcctcaggaacagaagcag
atgctgggtgagcgtctgttccccctgatccagaacatgcatcccagcctggcgggcaag
atcaccggtatgctgctggagattgataactcagagctgctccacatgcttgagtcacct
gagtcactgcgctcaaaggtggatgaggctgttgctgtgcttcaggcccaccaggccaag
gaggccgctcagaagtccaccactcccgctggtgttcccagcgtctaa
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