Thunnus thynnus (Atlantic bluefin tuna): 137192603
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Entry
137192603 CDS
T11154
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137192603 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tty03041
]
137192603 (prpf40a)
Spliceosome [BR:
tty03041
]
Complex A
U1 snRNP components
U1 related factors
137192603 (prpf40a)
Complex B
137192603 (prpf40a)
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Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
137192603
NCBI-ProteinID:
XP_067459525
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All DBs
Position
11:complement(16912516..16927027)
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AA seq
877 aa
AA seq
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MSSSEANNGPSQAPPYPGVPPSGMPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVESTAAAPGTTSAT
NGSPQEEQPKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPEELKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAAAPSSTTAPVLQADNTATM
ATVMEAETATAVSEEHLSQAAVHHTAETTDAPVASSESSVTAEATASIEVAKEERPELQK
KTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNAYK
VQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFSEQEVWSCVPERDRL
EIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAE
DEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHDHG
QLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKD
KGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKR
KEAAFKNMLKQATPPLEPETTWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEHECQ
HHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERSYK
KSKKHKKKGKKRRHKSASPDTDNEKKGRERDGKREKDLEKDKENDKSRGKSRSDSKQKSP
KRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagccaagcgccaccttatccaggtgtaccg
ccctcagggatgcctcccccctttatggggccaccaggaataccgcctcatttccctccc
attggaatgcctcctatgggacagcgacctcccagtatgactccgatgccccctggtata
attccccctggtataatgccgccaatgggggcacctccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcatgccagctgcggctgtacaa
ccaacgggaccgcctggtgttgagtccacagctgctgcacctggaacaactagtgccacg
aatggatctccacaggaagaacagccaaagaagaagtccctgtggaccgaacacaaatca
ctggatgggaagacctattattacaacacagagaccaagcagtccacatgggagaaacca
gaagaactcaaatctcctgcagaacaaatgttgtctaaatgtccttggaaagagtacaag
tcagacacagggaagccttattattacaactctcagacgaaggagtccagatggaccaaa
cccaaagagctggaggatctggaagccatgatcaaagcagaggagaatggaacggcagag
gcagcggctcccagctccaccacagctcctgtcttgcaagcagataatacagccactatg
gcgaccgtaatggaggcagaaactgcaacagcggtctcagaggaacacctgtcccaggcg
gccgtgcatcacacagctgagaccacagatgcacctgtggcttcctcggagagctcagtc
accgcagaggctacagccagtattgaagttgcaaaggaagagcggccagaacttcagaag
aagacttacaaatggaacacgaaagaggaggccaagcaagccttcaaagagctgctgaag
gagaaaggtgtgtcctcaaactcctcttgggaacaggccatgaaaatgatcatcaacgat
cctcgctacagtgcactccccaagttgagtgagaagaagcaggcgttcaatgcctacaaa
gtccaaacagagaaagaagaaaaggaggaggccagaattaaatacaaggagtccaaagaa
acctttcagaggttcttggagaaccatgagaagatgacatctaccaccagatacaagaaa
gcagaacagatgtttagtgagcaggaggtgtggagctgcgttccagagagggacaggctg
gagatctatgaagatgtactgttctacctagcaaagaaagagaaggaacaagccaagcag
ctgaggaagaggaactgggaagctctgaagaacattctggacaacatggccaacgtcacc
taccgcaccacctggtcagaggcccagcagtacctgctagacaaccccacctttgcagag
gacgaggagctacagaatatggacaaagaggatgccctcatttgttttgaggagcacatc
cgggcactggagaaggaggaggaagaggagaaacagaagactcttctcagggagaggaga
cgacaacgcaaaaacagagaggccttccagaaattcctggatgagctccacgaccacggt
cagcttcactccatgtctgcctggatggagatgtacccgaccctgagctcagacatccgc
tttgccaacatgctgggccagccgggttccactcccctcgatctgttcaaattctatgtg
gaggacctaaaagcccgctaccatgatgaaaagaggatcattaaagatattcttaaggat
aaaggcttcctggttgaagtgaacaccagctttgacgactttggatcagtcatcagctca
gataagagagccaccacactggatgcaggaaacataaagctggccttcaacagtttactg
gagaaggctgaagccagagagagagagcgagagaaggaggaggcgaggaagatgaaaagg
aaagaagcagccttcaagaatatgctgaagcaggccacgccgccgctggagccagagact
acatgggagggagtcagagagagattcttaaaagagtccgcctttgaagatgtgaccctg
gagtcagagaggaaacggatattcaaagacttcatgcacgtcttggagcatgaatgccaa
catcaccactccaagacgaagaagcactcaaagaagtccaagaagcaccacaggaaacga
tcccgctctcgatcgggctcagagtctgaagatgaggaataccacaagaagaaaaagaga
tcgcagtccaaatctccttctgaacgctcctccagcggagaatctgagagaagctataag
aaatccaagaagcacaagaagaagggaaagaagagacgccacaagtctgcatcgccggac
actgacaacgagaagaaaggaagagagcgtgatggaaagcgtgaaaaggacctagagaaa
gataaagagaacgacaagtctcgggggaaatctcgctccgactccaaacagaagtctcct
aaaaggaaagcagccaaagaggagggtggctgggatacgtcaggcagtgagctgagtgaa
ggagaactggagaaaagaagaagaactttactggaacagctggatgcaccttga
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