Thunnus thynnus (Atlantic bluefin tuna): 137192823
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Entry
137192823 CDS
T11154
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04382
Cornified envelope formation
tty04510
Focal adhesion
tty04512
ECM-receptor interaction
tty04518
Integrin signaling
tty04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137192823 (col4a2)
04518 Integrin signaling
137192823 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137192823 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137192823 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137192823 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tty04147
]
137192823 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
tty00536
]
137192823 (col4a2)
Exosome [BR:
tty04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137192823 (col4a2)
Glycosaminoglycan binding proteins [BR:
tty00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137192823 (col4a2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
137192823
NCBI-ProteinID:
XP_067459883
LinkDB
All DBs
Position
11:21839184..21899517
Genome browser
AA seq
1676 aa
AA seq
DB search
MSGTMQEQHNRGVNNLRLVLLCLFVAILASGVHAGGKKHSGPCGGRDCSGGCKCFPEKGA
RGHPGPLGPVGPLGPPGRPGDPGIQGQKGQKGDRGHGGIIGPKGSMGMTGVPGFSGNDGI
PGHPGQAGPRGKPGADGCNGTHGEPGSPGQIGYNGSPGFPGQHGRKGEKGDSLEVTVFME
RFRGDPGTPGINGIFGPPGSRGFVGRGGFPGPKGPPGPPGPPGPKGTMTKVFKGVKGDQG
DIGLPGPQGNSTQPYTGPTSALPGPLGLKGPKGDRGDSADNKGETGVMGFPGQRGVSGAD
GNPGSRGDPGERGLVGGHGPKGVRGDAGDLILSPSPWPSEAGLPGLPGEQGPQGERGPVG
DQGFPGPPGGYDFHSQQQVFDFTGPFGLKGERGEKGQQGEPGLPAVSAGRPGSDGRPGFR
GLPGPKGTWEEFFKGAPGGRGRPGNAGSKGVRGDHGECECTVVNSPPGPPGPSGEHGDAG
MTGEFGMEGDLGEPGPQGDDGFPGSPGLRGVPGPKGQKGLLAVAKEKGYAGDQGVPGQVG
EPGVSGAQGQDGQPGVPGNRGLTGDSPRGERGDKGYPGRPGRPGAAGLRGEPGLVLGGFK
GQPGLPGDDGLAGYHGVPGTPGSPGGCSRTGDGGQVDVTGSPCEALPGPPGLPGLPGPSG
STGLSGLQGQKGSQGPYGAQGEKGETGEQGRGGRPGPPGFAGPRGDLGVPGSKGSVGNPG
LPGVPGRNGAEGEKGFHGEIMGASPGPPGDPGLPGLQGNKGPIGVQGEPGYPGMIGMPGM
IGLKGETGPSGLQGEQGRPGPAGKYGFPGDPGTAGPPGPIGVTGQPGFTGERGSEGDPGP
PGPIGLKGVPGPYGNDGAVGEDGFPGDQGQIGQHGRTGLQGIKGITGSPGMSGFEGVRGD
IGLKGFGGLKGEPGVTGQFGPKGLKGQTGEKGERGLMGPPGEKPHIPLYMIVDMKGLKGD
RGYFGNQGFTGPRGAKGLPGVPGHEGTHGLPGDPSNEKGYQGDPGAQGLPGMRGMPGITG
NRGITGFHGMTGNKGIKGSPGAYGASGEGGRKGVKGDKGVRIDVPGSTGLRGEIGVPGEQ
GEKGLFGQTGERGPSGFDGIEGKRGEPGDPGTSGYTGSDGQKGTPGNQGQKGFPGTPGRE
GHPGFPGFPGNKGFPGPKGLYGLHGLKGQKGISGTPGVDTIGPAGQPGTKGERGDTGDPN
NQQGVPGTSGLKGFQGAQGDQGQPGLAGLLGPEGPDGTPDRPGATGEIGYVGPKGYQGFP
GARGLPGEDGPTGEKGISGFNGYPGLPGRKGFQGDQGAFGYRGPNGVSGKKGVKGEQGLM
GVPGMIGVKGERGPAGPKGTTGPPGFRGFPGKQGPTPQPIKVPGERGPLGPQGIQGPKGV
KGEPGPKGPPGESGFMGPIGQKGMPGIGGTPGIPGFRGQSGQTGHPGLQGMEGHRGKPGI
SGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAG
SCLPRFNTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEA
PSVAIAVHSQDVTIPQCPVGWRSLWIGYSFVMHTAAGNEGGGQSLSSPGSCLEDFRTTPF
IECNGAKGTCHYFANKHSFWLTSIDQSFHTQPVSETLKAGQLLSRISRCQVCMKNL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaccatgcaagaacaacacaacagaggagtaaacaatctgaggctggtgctt
ctgtgcctcttcgttgccattctcgcctcaggagtgcacgcgggtgggaagaaacacagt
ggcccctgcggaggaagagactgcagcggaggctgtaaatgtttcccagagaagggtgcc
agaggtcaccctgggcctcttggtcccgtgggcccccttgggcctccagggagaccaggt
gatccaggcatccaaggacaaaaggggcagaaaggtgaccgtggccatggtggcatcata
ggtcctaaaggaagtatgggaatgacaggagtacctgggttttctggaaatgatggcatt
cctggccacccaggacaagctggacccagggggaagccaggtgcagatggctgtaatggg
actcatggagaacctgggtcaccgggacaaatcggttataatggctcacctggttttcct
ggacaacatggcaggaagggagagaagggagactccctggaagtgacagtgttcatggag
cgtttcaggggagatccaggcacaccagggatcaatggaatatttgggcctccaggaagc
cgagggtttgtaggtagggggggcttcccaggaccaaagggtcccccagggcctccaggc
cccccaggaccaaagggcactatgaccaaagtgtttaagggagtcaaaggagaccaaggg
gacattggactaccagggcctcaaggaaactctactcaaccctacactgggcccacttcc
gcactcccgggacctctaggattgaagggtccgaaaggagacagaggagattcggctgac
aacaaaggagaaaccggtgtaatgggattccctggacagcgaggtgtatctggtgcagat
gggaatcctggatcaaggggggatcccggtgaacgaggactagtaggcggacatggtcct
aagggagtcagaggtgacgcaggagatctgattttatcaccatccccttggccttcagaa
gccggccttcctggtctccctggtgagcagggtccacaaggagagaggggcccggtagga
gaccaaggcttccctggacccccaggaggctacgactttcactcacagcaacaagtattt
gatttcacagggccgtttggtttgaagggggagcgaggggagaagggtcaacaaggagaa
ccaggactccctgctgtcagtgcaggacgtccaggcagcgatgggcgcccagggttcagg
ggccttccaggtcccaaaggaacatgggaagagttcttcaagggggctccaggtgggaga
ggaagaccaggcaatgcaggctccaaaggagtgagaggtgatcatggggaatgtgagtgc
actgttgtgaactctccacctgggccacctggcccttccggtgaacatggcgatgctggg
atgactggagagtttggtatggagggtgatttaggagagccaggtccccaaggagatgat
ggattcccaggatctcccggacttagaggtgtgccaggtccaaaaggccagaaaggtctc
ttagctgtggctaaagagaaaggatatgctggagaccaaggggttcctgggcaagttggt
gagccaggagtgtcgggtgcccaaggccaagatggtcaacccggtgtccctggcaaccga
ggtcttacaggggacagtcccaggggagaacgtggagacaaaggttatccaggtcgacct
ggtcgacccggtgcagccgggctgagaggagaaccgggtttggtccttgggggtttcaaa
ggccagcctggtctacccggtgatgatggccttgcaggctatcatggagtcccaggaaca
cctggcagcccaggcggctgtagtcggacaggagatggaggacaggtggatgtaacaggt
agtccttgcgaggctcttccaggacctcctgggctgcctggacttccaggaccaagtgga
tcaactggtttatcaggtcttcaaggccaaaaaggatcacagggtccatatggagcacag
ggagagaaaggagaaacaggagagcaaggtcgaggtggccgtccgggaccaccaggtttt
gccggaccccgtggagacttgggagttcctggcagcaaaggttcagtgggaaaccctggt
ttgcctggtgtgcccggacggaacggggcagagggtgagaaaggttttcatggagaaatc
atgggagcatcacccggaccccctggtgacccaggactgcctgggcttcaggggaataaa
ggcccgattggagttcaaggagagccaggctatccaggaatgatcggtatgcctggtatg
atcggtttaaagggtgagactggcccttctggcctgcaaggggagcaagggaggcctggg
ccagcgggcaagtatggcttccctggtgatcctggcacagcaggtccacctgggcctatt
ggcgtcactggacaaccaggattcactggagagaggggaagtgaaggagacccgggccct
ccaggtccaatagggctaaaaggggtcccagggccatatggaaatgatggtgctgttggt
gaggacggcttcccaggtgaccaaggacagattggtcaacatggacgcacaggacttcaa
ggaataaaaggaatcacagggtctcccgggatgtcgggttttgagggggtcaggggtgat
atagggttgaagggctttggtgggctgaaaggagaacctggagtgacaggtcaatttggc
cctaaaggactgaaaggtcaaactggagagaaaggtgagcgtggtttaatggggccgcct
ggggagaagcctcatatccctctctatatgattgtcgacatgaagggactcaagggagac
cgtggatatttcggaaaccaaggtttcaccgggccaagaggtgctaagggtttacctggt
gtaccgggccatgagggaactcacggccttcctggagaccccagcaatgagaaaggttac
caaggggatccaggtgcacaggggctgccggggatgagaggaatgccaggcataactgga
aatcgaggaattactggctttcacgggatgactggtaataaaggaattaaaggaagtcct
ggtgcctatggtgcatcaggagaaggaggaaggaagggagtcaaaggtgacaaaggtgtc
cgtatagacgttccaggatctactggactaagaggagagattggtgtcccaggagagcaa
ggtgagaaaggattatttggacagactggggagaggggcccctctggttttgatggtatc
gaagggaaaaggggagagccaggtgatccaggcacatcaggatacacgggttcagatggg
cagaaaggaactcctggtaaccaaggtcaaaagggttttcctggaacgcctggacgagaa
gggcacccaggctttcctgggttcccaggaaacaaaggtttccctggcccgaagggtctt
tatggattacatggactaaagggacaaaagggtatctctggaactccaggtgtggatacc
attggaccagctggacagccaggaactaaaggagagaggggagacaccggtgatcccaac
aaccagcagggtgttccgggtacatcgggtttgaaaggcttccagggagctcaaggtgat
cagggtcaacctggactagctggattactcggccctgaaggaccagatgggaccccagac
agaccaggagccactggggaaattggatatgtaggacctaaaggataccaaggtttccct
ggagccagaggtcttcctggtgaagatggtccaactggagaaaagggtatatcaggattc
aatgggtatcccggactccctggtaggaaaggattccaaggagaccaaggtgcatttgga
tacagaggacctaatggtgtctctgggaagaaaggagtgaaaggagagcaaggattgatg
ggagttcctggtatgattggtgtgaagggagagagaggaccagctggtccaaaaggaacc
actggaccccctggtttccgtgggtttccaggcaaacagggtcctactccccagcccatc
aaagttccaggagagagaggcccactgggaccacagggtatccaaggaccaaagggggtt
aaaggggaaccagggcccaagggaccccctggggaatcaggtttcatgggacccattggg
caaaagggcatgcctgggattggtggtacaccaggaatacctggattccgtggacagagt
ggacaaacgggtcaccctggtctgcaaggcatggaaggtcaccgtggcaaacctggtatc
agtgggttacctggtatgcctggccgcagtgtcagtgtgggttacttgttggttaaacac
agtcaatcagaacagacgcccatgtgccctgtgggcatgtctaaactgtgggacggatac
agtctgctgtaccttgagggtcaggaaaaggcccacaaccaggatcttggtttggctggt
tcctgcctcccacggtttaacaccatgcccttcctgtactgcaatcctggagacatttgt
tactatgccagcagaaatgataagtcctactggttgtcaacaacagctccgcttcctatg
atgcctgtagaagagggagagatcaaaccgtatatcagccgctgctcagtatgtgaggct
ccatcagttgccatagcagtccatagccaggacgtcactatcccacagtgcccagtgggc
tggcgcagcctgtggattggctactcttttgtcatgcatacagcggcaggaaatgaaggt
gggggtcaatccttgtcatcgcctggctcctgcctggaggacttccgaacaacaccattc
atcgagtgtaacggggccaaaggcacatgccactattttgctaacaagcacagcttctgg
ctaacctccatagatcagtcgtttcacactcagccggtatcagagacgctcaaagcaggc
cagctcctgtcacgcatcagccgttgccaggtctgcatgaagaacttgtga
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