KEGG   Thunnus thynnus (Atlantic bluefin tuna): 137192824
Entry
137192824         CDS       T11154                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tty  Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04382  Cornified envelope formation
tty04510  Focal adhesion
tty04512  ECM-receptor interaction
tty04518  Integrin signaling
tty04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tty00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    137192824 (col4a1)
   04518 Integrin signaling
    137192824 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    137192824 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    137192824 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    137192824 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tty04147]
    137192824 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:tty00536]
    137192824 (col4a1)
Exosome [BR:tty04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   137192824 (col4a1)
Glycosaminoglycan binding proteins [BR:tty00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   137192824 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 137192824
NCBI-ProteinID: XP_067459887
LinkDB
Position
11:complement(21793257..21839188)
AA seq 1640 aa
MLLQTGTLLLLAVLSSSVDQSRAEGCGASCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGPMGPKGDLGEPGAPGIKGVRGPPGLAGFPGNPGLPGINGNDGPPGAPGIPGCN
GTKGERGRDGTPGFPGLQGPPGIPGIPGMKGDPGGLIGLVPLKGEKGLQGTPGFPGPVGP
PGPTGPPGPNGYPGPKGDAGPPGPPGEKGDKLAFLGEKGEKGEQGFRGPPGPPGPPAGEV
YRPPTEYIPGPRGETGNKGEKGEKGFCIPHLDGVKGDPGPPGPRGKPGKDGESGSKGETG
FPGSPGYDGSPGEKGEKGPPGYGSGAPGPPGPRGLPGLQGQKGFPGPQGEAGPPGRFIEG
PRGESGQKGDVGEKGDRGVEGESLVGPPGQPGPIGPPGPPGQPVDPNECNIEKGAPGPPG
PPGLQGELGQKGDKGDTCVQCEGFGPPGLPGPQGTKGERGPPGRVGGKGEKGQPGLAGNP
GRPGIDGSQGLMGAPGAVGEPGDIFVAPGLKGDKGLPGVPGSPGQPGLEGKPGRDGIPGL
PGLKGEPAKAGIKGERGPNGDTGFTGTPGERGPPGLPGFGQPGEPGEKGSQGRPGIPGSP
GVPGVKGEPGISLSTPGPQGAPGPRGESGRPGLQGDRGNPGDAGLPGFPGQKGETGPPGI
GLPGPTGAKGISGIPGAPGLPGEPGRPGQDGFTGQPGSPGQKGEPGRGLPGPKGLQGLPG
ITGFQGEKGGIGLPGIPGQEGQTGPPGPQGIKGEMGPPGSPGVVGLPGVPGKGSPGAPGP
QGVPGEQGPHGREGVKGEKGYPGPPGLDMPGPQGEKGISGFPGTPGSKGLPGPPGLPGRD
GLIGNQGPKGDMGVMGTPGVPGFPGPPGNPGSPGLRGDPGFPGSRGTVGETGSKGERGDT
GLQGPPGNMTEVDMEHMKGEKGDIGDTGDPGITGEKGFRGMPGDPGMPGKDGEPGLPGQP
GEKGDPGFPGSPGNIGQPGQKGSVGEMGIPGPSGPKGTKGDIGTPGHPGFRGTDGQKGET
GLPGEPGIGLPGHPGEKGQTGQPGFPGTPGDKGQKGHVGMPGKPGLQGTKGDKGSIGYPG
QPGLPGEKGTPGLPGSAGETGLDGRPGEAGLQGPPGSTGEKGEPGVDGIPGSSGERGDPG
IPGQGFPGPPGVLGDKGDKGSTGFPGTPGHPGIPGIKGDKGLQGLQGRQGEPGERGPPGS
SLQGPKGERGETGQPGETGVTGAPGPSGVPGREGLKGDKGDPGHPGFQGETGHKGDPGVP
GLPGQSGLPGIDGQKGERGLQGVPGFPGTKGNFGDRGVKGELGDRGFPGEKGIDGPPGPP
GPHTFIKGDIGFPGIQGLPGPQGPSGLPGQKGQQGVTGITGPKGEDGVPGHHGQPGSKGE
PGLPGPQGPRGHPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQTVEVPYCPEGTSLIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIMIPPCPHGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFTKPVPTT
LKAGNLRTHISRCQVCMKRT
NT seq 4923 nt   +upstreamnt  +downstreamnt
atgctgctacagacaggtaccctgttactgctggcggttctctcatcaagtgtagaccag
agtagagcagagggttgcggggcatcatgtggaaaatgtgactgcagtggtgtgaaagga
gcaaagggtgagcgtggatttccaggtcttcaaggcaatatgggattcccagggatgcag
ggacctgaggggcctccagggccaatggggcccaagggggatctgggtgagcctggggct
cctggaataaaaggagtgcgaggccctcctggtctggcaggtttcccaggaaacccagga
ctaccaggtatcaacggaaatgatggtccacctggtgcaccaggtatcccaggatgcaat
gggactaaaggagaaagaggcagggatggcactcctggttttcctggtcttcaaggacca
cctggtatcccaggaattcctggaatgaagggtgaccctggtggtttgattgggctggtt
cccctgaaaggagaaaaagggttgcaaggcacacctggatttcctggaccagttggacct
cctggacctaccggccccccaggacctaacggctatccaggacccaaaggtgacgctggt
ccaccaggccctcctggagagaagggtgacaagctggcctttttgggtgagaaaggagaa
aagggtgagcaagggtttcgtggcccacccggccctcctggacctccagctggtgaagtc
tacagaccacccacggagtatatacctggaccacggggggagacaggaaataaaggagag
aaaggagagaaaggcttttgcatccctcatctcgatggtgtcaaaggtgatccaggccca
cctggaccaagaggcaaacctggcaaggatggagagagtgggagtaagggagaaacgggc
tttcctggcagtcctggatacgatggttccccgggtgaaaaaggagaaaaaggaccacca
ggttatggtagtggtgcccctggtcctcctggccccagaggtctcccaggattacaagga
caaaaaggttttcctggcccccagggagaggcaggtcctccaggccgttttattgaaggg
cctcgtggagagagtggtcagaagggagacgtgggtgagaaaggagacaggggggttgaa
ggagaatctctagttggacctccaggacaacccgggcctattggacctcctggaccaccg
ggacagccggttgaccctaatgaatgtaacatcgagaaaggagctcctggcccacctgga
ccccctgggttacaaggggaattgggacagaaaggtgacaaaggagatacctgtgttcag
tgtgaaggttttggcccccctggattacctggcccacagggcactaaaggagagcgggga
cctcctgggagagtgggtggcaaaggagaaaagggtcagcctggactagctggaaatcct
ggaagacctggtattgacggaagtcaagggttgatgggagcccctggtgctgttggtgag
ccaggggacattttcgtagctcctggtctgaagggggacaaaggactgcctggtgttcct
ggttcacccgggcagccagggctggaaggaaagccagggagagatggcatcccgggttta
cctggcctcaaaggagaacctgccaaagcaggcatcaagggtgagcgtggaccaaacggg
gacactggttttactgggaccccgggagagaggggtcctcctggtctgccaggcttcggt
caaccaggagagcctggagagaaggggagtcaggggagaccaggcattcctggatcacct
ggagtacctggtgtaaaaggtgagccaggcataagtttgagcactcctggacctcaaggt
gcacctggaccacgaggagaaagcggcagacctggacttcaaggtgacagaggcaatcca
ggagatgctgggttgccaggtttcccaggacagaaaggtgaaaccggcccccctggaatt
ggattgccaggcccaactggtgctaaaggaatcagtgggattccaggagctccaggatta
ccaggagagccaggaagaccaggacaggatggctttactggacaacctggttcacctgga
cagaaaggtgaaccaggacgagggctgccaggcccaaaaggtttgcagggactcccagga
attacgggcttccagggagagaagggtggcattggactacctggtattcctggacaggaa
ggccagactgggccaccaggacctcagggaatcaaaggtgaaatgggacccccaggatct
cccggcgtggttggattaccaggtgttccaggaaaaggctcacctggcgctcctggacca
caaggagtacctggagagcaaggaccacatggtagggaaggtgtaaagggagaaaagggc
tacccgggtcctcctggtctggacatgccggggcctcagggagagaagggaatctccggg
ttcccaggaaccccaggttctaaaggactgccagggccaccaggcttaccaggcagggac
ggactgattggaaaccaaggtcctaaaggtgatatgggcgtcatggggacaccgggagta
ccaggatttcccggacctcctggtaatcctggatctcccggtttgagaggtgaccccggt
ttccctggatcaagagggactgttggtgagactggatccaaaggagaaaggggagacaca
ggtcttcagggacctcctggcaacatgactgaagttgacatggagcacatgaagggggag
aagggagacatcggagacactggtgaccctggaatcactggagagaagggcttccgtgga
atgcctggagaccctggaatgcctggcaaagatggagagcctgggttacctggacaacca
ggtgagaaaggagaccctggttttcctggaagtcctggcaatatcggacaacctggacag
aagggcagtgtaggagagatgggaataccgggtccgtctggtccaaagggtactaaagga
gacattggtacaccgggacatcctggcttcagaggcacggatggacaaaaaggtgaaaca
ggattacctggtgagccaggtatcggtctcccaggacatccaggagaaaagggtcagaca
ggccagcctggattcccaggaacaccaggagacaagggtcagaagggtcatgtaggtatg
cccggcaagccaggactgcaaggaactaaaggagacaaaggaagcatcggctatccaggt
cagccaggtttgccaggtgagaagggtacccctgggctgcctgggtctgcaggagaaact
ggtcttgatggtcggcctggtgaagctggcttgcagggacctcctggttctactggagag
aagggagagcctggagtggatggcatccctggatcctcaggagagagaggagacccaggt
atacctggccaaggtttccctgggccacctggagtgcttggtgataaaggtgacaaaggt
agtactggcttccctggcactcctggtcatccaggtatccctggtatcaaaggcgacaag
ggacttcaaggcctacagggtcgccagggtgagccaggagagagggggcccccaggttcc
tctctacagggccctaaaggagaacggggagaaacaggacaacctggggaaacaggagtc
acaggagcacctggaccctctggtgtgccaggcagagagggcctaaagggagacaaagga
gatccaggtcaccctggtttccagggagagacaggacataagggtgaccctggagttcct
ggacttcctggacaatctggtcttccaggtattgatggacagaagggagagaggggactg
cagggtgtccctggcttcccaggtacaaagggtaatttcggggacagaggagtcaaagga
gaacttggagacagaggattcccgggagaaaagggtattgacggcccccctggtccccct
ggcccccacaccttcattaaaggagacattgggttcccagggattcaaggcttaccggga
ccccagggtccatctgggctccctggacagaaaggacaacaaggtgtgacaggtattaca
ggaccaaaaggtgaagacggcgtccctggacatcacggtcaacctggatctaaaggagag
cctggcctgcctgggcctcaaggacccagaggacaccctggacccccgggacctgatggt
gttccaggtcaagtgggtccccctggcccctcctcaatggaacacggtttcctggtaacc
cgtcacagtcaaacagtggaggttccatattgtcctgaggggacctcgctcatatatgat
ggctactccctgctatacgttcaaggaaatgaacgctctcacggacaggatctaggtacg
gcagggagctgtctgaggaagttcagccccatgcccttcctgttctgtaacatcaacaac
gtgtgcaactttgcctcccgtaatgattactcctactggctcacctcccctgagcccatg
cccatgagcatggcaccaatcactggtgaaagcatcaaacccttcatcagcaggtgtgct
gtgtgtgaagccccagccatggtgattgcagttcacagtcagactatcatgatcccacca
tgccctcatggctgggactctctgtggattggctactcctttgtcatgcacaccagtgct
ggtgctgagggctcaggccaggctctggcctcacctggttcctgcttggaggagttccgc
agtgctccgttcatcgagtgtcatggtcgtggaacctgcaactactacgccaactcttac
agcttctggctcgcaactatcgaagacagcgagatgtttacgaaacctgtcccaacaaca
ctaaaagcgggaaatctccgaacacacataagccgctgtcaggtgtgcatgaagaggaca
taa

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