KEGG   Thunnus thynnus (Atlantic bluefin tuna): 137193668
Entry
137193668         CDS       T11154                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
tty  Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04115  p53 signaling pathway
tty04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tty00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    137193668 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    137193668 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tty04121]
    137193668 (cop1)
Enzymes [BR:tty01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     137193668 (cop1)
Ubiquitin system [BR:tty04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    137193668 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     137193668 (cop1)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX zf-C3HC4_4 Beta-prop_WDR90_POC16_2nd zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 WD40_RFWD3 WD40_like Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 zf-rbx1 zf-RING_10 WDR90_beta-prop_4th UvrD-helicase zf_C2H2_10 Sina_RING
Other DBs
NCBI-GeneID: 137193668
NCBI-ProteinID: XP_067461071
LinkDB
Position
12:6042559..6060009
AA seq 712 aa
MSSNRSQQSAGGASSVPSTSSSSSTGGTGNTTGDGGSSAVTSNGNSAGNVVPSRTLAAVG
EGGLSVPTLAAVPSPRGGFASLSRPSASSGSRKKSLHQAPLCNGLLNSYEDKSNDFVCPI
CFEMIEEAHMTKCGHSFCFKCIRQSLEDSNRCPKCNYIVDNVDQLYPNFLVNELILKQKQ
RSEEKRLKLDHPNGSRWQVFQDVLSPDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQ
ILMEFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPMMEAECTVPNVEAPSPA
PSCSSIMEPPDYSQPPGFGGTAQGKRQTWYNSTLASRRKRLTAHFDDLEQCYFSNKMSRI
TDEGRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIA
GVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWD
GFTGHRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVC
CVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTD
SQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFK
FDTVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2139 nt   +upstreamnt  +downstreamnt
atgtcaagcaaccggtcacagcagagcgctggcggggcaagttcagtgcccagcacaagt
agcagcagcagcacaggaggcaccgggaacacgaccggtgacggtgggagtagcgccgtt
acaagtaatggtaacagtgctggaaatgttgtgccctcccggaccctggcagcagtcggc
gagggcggcttgtcggtgccaactttggccgccgtgccgtcgccccggggtgggttcgcc
tcgctgagcagaccctctgcgtcctcaggcagcaggaagaagtccctccaccaagccccc
ctttgcaacggcctcttaaattcatacgaagataaaagcaacgattttgtgtgtccgatt
tgcttcgaaatgatagaagaggcacacatgactaagtgtgggcacagcttttgcttcaag
tgtatccgccagagcctggaggatagcaacagatgtcccaagtgtaactatattgttgat
aatgtggatcagctttatccaaactttcttgtgaatgaactgatccttaaacagaaacaa
aggtcggaggagaagagactaaaattagatcatcctaatgggtccaggtggcaggtcttc
caggacgtgttgagtcctgatcaagagaacttggaccttgcaaatgtcaacctgatgctg
gagctgctggttcagaagaagaagcagctggaggcggaatcccaagcagctcagagacag
atcctcatggagtttcttaaagaggccaggagaaacaagagagagcaactggagcaacta
cagaaagagcttaactttcttgaagaggacattaagcgtgttgaggaaatgagcgggctg
tactctccaatgatggaggcagagtgtacggtgcctaatgtagaggctccctcaccagca
cccagctgtagtagtattatggagccaccagactacagccaacctccaggatttggtgga
acagcccagggaaaaagacagacctggtacaacagcactctggcgtcaaggaggaaacgg
ctgacggctcatttcgacgatctggagcagtgctacttctccaacaaaatgtcacgcatc
acagatgaaggcaggaacttgaaccagctcgatgacttcatggagtgtctgtccaagttc
acccgctacaactctgtgcggccgctggccaccctctcctacgctagtgacctctacaac
ggctccagtattgtctccagtattgagtttgaccgtgactgtgactactttgccatcgct
ggtgtgaccaagaaaatcaaggtgtttgagtatggcaccgtgatccaggatgcagtggac
atccactaccctgtcaacgaaatgacctgcaattccaaaatcagctgtatcagctggagc
agttatcacaagaaccttctggcaagcagtgactatgagggtaccgtcatcctgtgggat
ggattcaccggccacaggtccaaagtctaccaggaacacgaaaaaaggtgttggagcgtc
gacttcaatctgatggaccccaaactcttagcctccggttctgatgatgctaaagtgaag
ttatggtcaaccaatcttgacaactcagtggccagtattgaggccaaggccaatgtctgc
tgtgttaagttcagtccaacatccaggtatcatctggcgtttggctgtgcagaccattgt
gtccactactacgatctgcgcaacactaaacagccaatcatggtgttcaaaggccacagg
aaagctgtgtcctacgccaagtttgtcaacggagaagaaatcgtttctgcgtcgacagac
agtcagctgaaactatggaatgtcaacaaacctcactgcctgcgctccttcaagggtcac
atcaacgagaagaactttgtaggcctggcctccaatggagactatgttgcctgtggcagt
gagaacaattccctgtacctatactacaaaggactttccaagacacttttaacgttcaag
tttgacacagtgaagagcgtcctggacaaggacaaaaaggaagacgacaccaacgagttt
gtcagtgctgtctgctggagggccctgcctgatggagagtcaaacgtactgattgctgca
aacagtcaaggaacaatcaaggtactcgaactcgtctga

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