Thunnus thynnus (Atlantic bluefin tuna): 137193998
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Entry
137193998 CDS
T11154
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03013
Nucleocytoplasmic transport
tty03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137193998
03015 mRNA surveillance pathway
137193998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137193998
Enzymes [BR:
tty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137193998
5.6.2.5 RNA 5'-3' helicase
137193998
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137193998
mRNA cycle factors
Common to processing body (P body) and stress granule
137193998
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
137193998
NCBI-ProteinID:
XP_067461602
LinkDB
All DBs
Position
12:12025281..12040410
Genome browser
AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPSPMTSMNI
PIPFNLVMPPIPPPGYMGQVNGPTAGRGGGMKGKAGSGGGGGTRGGRQRNRGNMGNHSGG
NGGQHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagttcgcagactctaacgttcctggacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagacccagacccagggccaaacccagagtcagctggacagccaggttaatggt
cctgacggggtattgcagaatggagacgaccctgtggttaaagccagtcagttgttggcg
gagttgaactttgaggaggatgaggaggacacctactatactaaggatcttcctgtgcat
gcctgcagttactgtgggattcatgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttttgcaacggccgtggaaacacatctggcagccacattgtaaaccatctggta
agagcaaagtccaaggaggtgaccctgcataaagacggccctctgggggaaactgtgctg
gagtgctacaactgtggctgtcgcaacgtcttcctgctgggcttcatccctgcaaaggcc
gactcagtagtggtgttactgtgcaggcagccatgcgccagccagagcagcttgaaagac
atcaactgggacagctcgcagtggcagcctctcattcaggaccgctgcttcctgtcctgg
ctggtcaaaatcccgtcagagcaggagcagctcagggcccgccagatcactgctcagcag
atcaacaagctcgaggaactctggaaggaaaatcctacagcaaccttggaggacctggag
aagcctggtgtggatgaggagccccaacacgtcctgctccgctatgaggatgcctaccaa
taccagaacatctttggtcctctggtgaagctggaggctgactatgataagaaactcaaa
gagtcccagactcaagacaacattacggtcagatgggacttgggtctgaacaaaaagagg
attgcttatttcaccctccccaagacagattcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggctcctccatggaaaggcattggacatgtcatc
aaagtccctgataactatggtgatgagatcgccatagagctgaggagcagtgccggggct
ccagtggagatcccgcacaactttcaggtcgactttgtgtggaagtccacttcctttgac
aggatgcagagtgctctgaagacatttgctgtggatgagacgtcagtgtctggttacatc
taccacaaactgctgggacatgaggtagaggacgtggtcatcaagtgtcagctgcccaaa
cgcttcactgcccagggactacctgacctcaaccactcccaggtgtatgctgtaaagacg
gtgctgcagcgtcccctcagtctgatccagggtcctcctggcacagggaagacagtgact
tctgccactatcgtgtatcacctggctagacagggcaacgggccggtgctggtgtgtgct
cccagtaacattgccgttgaccagctgacagagaagatccaccagactggacttaaagtg
gtgaggctgtgtgccaagagcagggaggccatcgactctcctgtgtccttcctggctctg
cataaccagacccgcaacatggacagtatgccagaacttcagaagctccaacagctgaag
gacgagactggagagctgtcctcctcagacgagaagcgctacagggctctgagacgcact
gctgagagggagctgcttatgaatgcagatgtgatctgctgcacttgtgtcggggcaggg
gatcctcgtctggccaagatgcagtttagatcaatcctgattgatgagagcacccaggcc
actgaacccgagtgcatggtgcctgtcgtcctgggggccaagcagctgatcctggtgggt
gaccactgccagctgggccctgtggtgatgtgtaagaaggcagctaaagcaggtctttcc
cagtctctgtttgagcgtctggtagttttggggatccggccaattcgtttgcaggtccag
taccgcatgcacccggccctcagcgccttcccctccaacatcttctatgagggctctctg
cagaacggagtcactgccggggaccgtgtgaagaaaggctttgacttccagtggccgcag
cctgacaagccgatgttcttttatgtcacccaaggccaagaggaaatcgccagctctgga
acatcatatctcaacagaactgaggcagccaatgtggagaaaataaccaccaggttgctg
aaggccggagcaaaacccgatcagatcggcatcatcaccccttatgagggacaaaggtct
tacctggtccagtacatgcagttcagcggctccctccataccaaactgtaccaggaggtg
gagatcgccagtgtggatgctttccaaggtagagagaaagacttcatcatcttgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgatccacgtcgtctcaatgtg
gcactcacaagggccaggtatggtgtgatcattgtgggaaaccccaaggccctgtccaag
cagcccctgtggaaccacctgttgaactactacaaggaacagaaggtcctggtcgaaggc
cccctgaacaacctgagggagagcctcatgcaattcagcaagcctcgcaagctggtcaac
accataaaccctgggggtcgattcatgagcacagccatgtatgatgccagggaggccctc
attcctggatctgtttacgatcgcagcagcaacgggcgtacatccaacatgtatttccag
acccacgaccagattggtatgattggcacaggccctagtcccatgacttccatgaacatc
cctatccccttcaacctagtgatgccccctatacctccacctgggtacatgggacaggtc
aacggacccacagcaggtcgtggtggcggtatgaaaggcaaggcaggcagcggaggaggt
ggtggcactagaggtggccgtcaaagaaaccgcggcaacatggggaaccacagtggaggg
aatggaggacagcatggaggccatatgagtggcagccaggccagccaggacctgggctcc
cagcccttctcccaggggcctctgacccagggctatatcaacatgagccagccgtcacag
atgagccagcctgggctctcccagcctgaactctcacaggacagttacctaggagatgag
ttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggggagcgggcc
taccaacacggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
